Bromine in PDB 5ogw: Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution

The structure of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

The binding sites of Bromine atom in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution (pdb code 5ogw). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution, PDB code: 5ogw:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Br403 b:0.5 occ:1.00 BR A:9UE403 0.0 0.5 1.0 C28 A:9UE403 1.9 0.3 1.0 N3 A:9UE403 2.8 0.3 1.0 C21 A:9UE403 2.9 0.8 1.0 CD2 D:HIS76 3.3 0.5 1.0 C20 A:9UE403 3.5 0.4 1.0 CG D:HIS76 3.6 0.9 1.0 CB D:HIS76 4.0 95.7 1.0 NE2 D:HIS76 4.0 0.2 1.0 OD2 D:ASP182 4.0 0.4 1.0 C27 A:9UE403 4.0 0.4 1.0 C22 A:9UE403 4.1 0.0 1.0 O3 A:9UE403 4.2 0.7 1.0 CG D:ASP182 4.4 0.5 1.0 ND1 D:HIS76 4.4 0.3 1.0 C9 A:9UE403 4.6 0.3 1.0 CE1 D:HIS76 4.6 0.3 1.0 C18 A:9UE403 4.7 0.6 1.0 OD1 D:ASP182 4.8 0.5 1.0 C8 A:9UE403 4.8 0.7 1.0 CB D:ASP182 4.9 0.6 1.0

Bromine binding site 2 out of 3 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Br403 b:0.6 occ:1.00 BR C:9UE403 0.0 0.6 1.0 C28 C:9UE403 1.9 0.6 1.0 N3 C:9UE403 2.8 0.2 1.0 C21 C:9UE403 2.9 0.5 1.0 CD2 E:HIS76 3.2 0.7 1.0 C20 C:9UE403 3.5 0.6 1.0 CG E:HIS76 3.5 0.5 1.0 CB E:HIS76 3.8 0.5 1.0 NE2 E:HIS76 4.0 0.2 1.0 C27 C:9UE403 4.0 0.9 1.0 C22 C:9UE403 4.1 0.4 1.0 OD2 E:ASP182 4.1 0.2 1.0 O3 C:9UE403 4.2 0.1 1.0 ND1 E:HIS76 4.3 0.5 1.0 CG E:ASP182 4.4 0.9 1.0 CE1 E:HIS76 4.5 0.2 1.0 C9 C:9UE403 4.6 0.8 1.0 C18 C:9UE403 4.7 0.1 1.0 OD1 E:ASP182 4.8 0.4 1.0 C8 C:9UE403 4.8 99.7 1.0 CB E:ASP182 5.0 0.6 1.0

Bromine binding site 3 out of 3 in the Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Cryo-Em Structure of Jasplakinolide-Stabilized Malaria Parasite F- Actin at Near-Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ E:Br403 b:0.9 occ:1.00 BR E:9UE403 0.0 0.9 1.0 C28 E:9UE403 1.9 0.6 1.0 N3 E:9UE403 2.8 0.8 1.0 C21 E:9UE403 2.9 0.6 1.0 CD2 A:HIS76 3.3 0.2 1.0 C20 E:9UE403 3.5 0.6 1.0 CG A:HIS76 3.6 0.2 1.0 CB A:HIS76 4.0 94.6 1.0 NE2 A:HIS76 4.0 0.1 1.0 C27 E:9UE403 4.0 0.7 1.0 OD2 A:ASP182 4.0 0.4 1.0 C22 E:9UE403 4.1 0.1 1.0 O3 E:9UE403 4.2 1.0 1.0 CG A:ASP182 4.4 0.9 1.0 ND1 A:HIS76 4.4 0.7 1.0 C9 E:9UE403 4.6 0.7 1.0 CE1 A:HIS76 4.6 0.1 1.0 C18 E:9UE403 4.7 0.9 1.0 C8 E:9UE403 4.8 0.4 1.0 OD1 A:ASP182 4.9 0.5 1.0 CB A:ASP182 4.9 99.9 1.0

S.Pospich, E.P.Kumpula, J.Von Der Ecken, J.Vahokoski, I.Kursula, S.Raunser. Near-Atomic Structure of Jasplakinolide-Stabilized Malaria Parasite F-Actin Reveals the Structural Basis of Filament Instability. Proc. Natl. Acad. Sci. V. 114 10636 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28923924
DOI: 10.1073/PNAS.1707506114