Bromine in PDB 5ss9: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer
Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer
All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer:
3.4.19.121;
Protein crystallography data
The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer, PDB code: 5ss9
was solved by
G.J.Correy,
J.S.Fraser,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.92 /
1.15
|
Space group
|
P 43
|
Cell size a, b, c (Å), α, β, γ (°)
|
88.728,
88.728,
39.288,
90,
90,
90
|
R / Rfree (%)
|
14.5 /
16.7
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer
(pdb code 5ss9). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the
Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer, PDB code: 5ss9:
Bromine binding site 1 out
of 1 in 5ss9
Go back to
Bromine Binding Sites List in 5ss9
Bromine binding site 1 out
of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINCOW000000AIWV - (R) Isomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:37.0
occ:0.48
|
BR09
|
A:RLU201
|
0.0
|
37.0
|
0.5
|
O
|
A:HOH427
|
1.6
|
21.0
|
0.5
|
C08
|
A:RLU201
|
1.9
|
35.4
|
0.5
|
HD1
|
A:PHE132
|
2.1
|
19.3
|
0.5
|
CD1
|
A:PHE132
|
2.2
|
16.1
|
0.5
|
O
|
A:HOH330
|
2.4
|
16.6
|
0.5
|
HB2
|
A:PHE132
|
2.5
|
17.7
|
0.5
|
CG
|
A:PHE132
|
2.6
|
14.6
|
0.5
|
HB2
|
A:PHE132
|
2.8
|
28.1
|
0.5
|
C10
|
A:RLU201
|
2.8
|
33.8
|
0.5
|
H101
|
A:RLU201
|
2.8
|
40.5
|
0.5
|
CE1
|
A:PHE132
|
2.9
|
16.1
|
0.5
|
HB1
|
A:ALA38
|
2.9
|
17.9
|
0.5
|
C07
|
A:RLU201
|
2.9
|
34.8
|
0.5
|
HB1
|
A:ALA38
|
2.9
|
15.9
|
0.5
|
H071
|
A:RLU201
|
3.1
|
41.7
|
0.5
|
CB
|
A:PHE132
|
3.1
|
14.8
|
0.5
|
CG
|
A:PHE132
|
3.1
|
23.2
|
0.5
|
O
|
A:ALA129
|
3.2
|
14.6
|
0.5
|
HE1
|
A:PHE132
|
3.2
|
19.3
|
0.5
|
H
|
A:SER128
|
3.3
|
20.5
|
0.5
|
HA
|
A:SER128
|
3.3
|
17.8
|
0.5
|
CD1
|
A:PHE132
|
3.3
|
23.9
|
0.5
|
H
|
A:PHE132
|
3.3
|
19.1
|
0.5
|
O
|
A:HOH442
|
3.3
|
17.6
|
0.5
|
H
|
A:SER128
|
3.4
|
16.4
|
0.5
|
CB
|
A:PHE132
|
3.4
|
23.4
|
0.5
|
CD2
|
A:PHE132
|
3.5
|
15.0
|
0.5
|
CD2
|
A:PHE132
|
3.5
|
23.1
|
0.5
|
O
|
A:HOH408
|
3.5
|
38.0
|
0.5
|
HD1
|
A:PHE132
|
3.6
|
28.6
|
0.5
|
HB3
|
A:ALA38
|
3.6
|
17.9
|
0.5
|
CB
|
A:ALA38
|
3.6
|
14.9
|
0.5
|
HA
|
A:SER128
|
3.7
|
22.9
|
0.5
|
CZ
|
A:PHE132
|
3.7
|
15.5
|
0.5
|
HB3
|
A:PHE132
|
3.7
|
17.7
|
0.5
|
HD2
|
A:PHE132
|
3.8
|
27.7
|
0.5
|
CB
|
A:ALA38
|
3.8
|
13.3
|
0.5
|
CE1
|
A:PHE132
|
3.9
|
24.5
|
0.5
|
N
|
A:SER128
|
3.9
|
13.7
|
0.5
|
CA
|
A:SER128
|
3.9
|
14.9
|
0.5
|
CE2
|
A:PHE132
|
3.9
|
14.5
|
0.5
|
H
|
A:ALA129
|
3.9
|
16.7
|
0.5
|
N
|
A:PHE132
|
3.9
|
15.9
|
0.5
|
N
|
A:SER128
|
4.0
|
17.1
|
0.5
|
CE2
|
A:PHE132
|
4.0
|
23.7
|
0.5
|
O
|
A:ALA129
|
4.0
|
25.1
|
0.5
|
HB3
|
A:PHE132
|
4.0
|
28.1
|
0.5
|
N
|
A:ALA129
|
4.0
|
14.0
|
0.5
|
H
|
A:PHE132
|
4.0
|
30.9
|
0.5
|
C
|
A:SER128
|
4.1
|
14.6
|
0.5
|
HB2
|
A:ALA38
|
4.1
|
17.9
|
0.5
|
HB2
|
A:ALA38
|
4.1
|
15.9
|
0.5
|
HD2
|
A:PHE132
|
4.1
|
18.0
|
0.5
|
HB3
|
A:ALA38
|
4.1
|
15.9
|
0.5
|
C11
|
A:RLU201
|
4.1
|
32.5
|
0.5
|
O
|
A:HOH377
|
4.1
|
26.7
|
0.5
|
CA
|
A:PHE132
|
4.1
|
16.6
|
0.5
|
C06
|
A:RLU201
|
4.2
|
33.3
|
0.5
|
CZ
|
A:PHE132
|
4.2
|
24.1
|
0.5
|
C
|
A:ALA129
|
4.2
|
15.2
|
0.5
|
CA
|
A:SER128
|
4.2
|
19.1
|
0.5
|
H
|
A:ALA129
|
4.3
|
25.4
|
0.5
|
HE1
|
A:PHE132
|
4.4
|
29.4
|
0.5
|
HZ
|
A:PHE132
|
4.4
|
18.6
|
0.5
|
O
|
A:HOH411
|
4.4
|
22.4
|
0.5
|
N
|
A:PHE132
|
4.5
|
25.7
|
0.5
|
O
|
A:ALA38
|
4.5
|
15.1
|
0.5
|
HA
|
A:PHE132
|
4.5
|
19.9
|
0.5
|
HA
|
A:LEU127
|
4.5
|
19.7
|
0.5
|
CA
|
A:PHE132
|
4.5
|
24.5
|
0.5
|
O
|
A:HOH350
|
4.5
|
14.7
|
1.0
|
O
|
A:HOH402
|
4.6
|
14.4
|
0.5
|
HE2
|
A:PHE132
|
4.6
|
28.5
|
0.5
|
C05
|
A:RLU201
|
4.6
|
31.9
|
0.5
|
N
|
A:ALA129
|
4.6
|
21.1
|
0.5
|
HG13
|
A:ILE131
|
4.7
|
24.6
|
0.5
|
C
|
A:SER128
|
4.7
|
20.1
|
0.5
|
HG12
|
A:ILE131
|
4.7
|
24.6
|
0.5
|
O
|
A:SER128
|
4.7
|
15.4
|
0.5
|
HA
|
A:LEU127
|
4.8
|
15.3
|
0.5
|
HE2
|
A:PHE132
|
4.8
|
17.4
|
0.5
|
CA
|
A:ALA129
|
4.8
|
15.6
|
0.5
|
HG13
|
A:ILE131
|
4.8
|
35.1
|
0.5
|
CA
|
A:ALA38
|
4.8
|
14.6
|
0.5
|
H
|
A:ILE131
|
4.8
|
20.0
|
0.5
|
HZ
|
A:PHE132
|
4.9
|
28.9
|
0.5
|
HA
|
A:PHE132
|
4.9
|
29.4
|
0.5
|
H111
|
A:RLU201
|
4.9
|
39.0
|
0.5
|
CA
|
A:ALA38
|
4.9
|
12.1
|
0.5
|
C
|
A:ALA38
|
4.9
|
15.6
|
0.5
|
O
|
A:ALA38
|
4.9
|
12.1
|
0.5
|
HG12
|
A:ILE131
|
5.0
|
35.1
|
0.5
|
C
|
A:LEU127
|
5.0
|
12.7
|
0.5
|
HA
|
A:ALA38
|
5.0
|
14.5
|
0.5
|
|
Reference:
G.J.Correy,
J.S.Fraser.
Ligand Screen Against Sars-Cov-2 NSP3 Macrodomain To Be Published.
Page generated: Thu Jul 11 00:57:52 2024
|