Bromine in PDB 5vij: Crystal Structure of GLUN1/GLUN2A Nmda Receptor Agonist Binding Domains with Glycine and Antagonist, 4-Bromophenyl-Acepc

The structure of Crystal Structure of GLUN1/GLUN2A Nmda Receptor Agonist Binding Domains with Glycine and Antagonist, 4-Bromophenyl-Acepc, PDB code: 5vij was solved by T.-C.Mou, P.Conti, A.Pinto, L.Tamborini, S.R.Sprang, K.B.Hansen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.98 / 2.11
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.886, 87.158, 122.254, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 25.5

The binding sites of Bromine atom in the Crystal Structure of GLUN1/GLUN2A Nmda Receptor Agonist Binding Domains with Glycine and Antagonist, 4-Bromophenyl-Acepc (pdb code 5vij). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of GLUN1/GLUN2A Nmda Receptor Agonist Binding Domains with Glycine and Antagonist, 4-Bromophenyl-Acepc, PDB code: 5vij:

Bromine binding site 1 out of 1 in the Crystal Structure of GLUN1/GLUN2A Nmda Receptor Agonist Binding Domains with Glycine and Antagonist, 4-Bromophenyl-Acepc


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of GLUN1/GLUN2A Nmda Receptor Agonist Binding Domains with Glycine and Antagonist, 4-Bromophenyl-Acepc within 5.0Å range: probe atom residue distance (Å) B Occ B:Br301 b:36.6 occ:1.00 BR7 B:5DX301 0.0 36.6 1.0 C10 B:5DX301 1.9 34.4 1.0 C09 B:5DX301 2.9 25.1 1.0 C11 B:5DX301 3.0 23.9 1.0 O B:ALA241 3.2 24.4 1.0 O B:HOH550 3.5 32.8 1.0 CG2 B:THR243 3.6 23.9 1.0 CB B:ALA241 3.8 24.9 1.0 CA B:GLY135 3.8 23.5 1.0 C B:GLY135 4.1 24.7 1.0 CG1 B:ILE136 4.2 20.4 1.0 C B:ALA241 4.2 27.7 1.0 N B:ILE136 4.3 19.9 1.0 C08 B:5DX301 4.3 24.5 1.0 C12 B:5DX301 4.4 25.1 1.0 O B:PHE240 4.5 24.5 1.0 CA B:ALA241 4.7 28.2 1.0 CD1 B:ILE136 4.7 26.9 1.0 N B:GLY135 4.7 26.5 1.0 CG2 B:THR116 4.8 19.5 1.0 O B:GLY135 4.8 23.7 1.0 C13 B:5DX301 4.8 25.2 1.0 CB B:THR243 4.9 23.0 1.0

G.E.Lind, T.C.Mou, L.Tamborini, M.G.Pomper, C.De Micheli, P.Conti, A.Pinto, K.B.Hansen. Structural Basis of Subunit Selectivity For Competitive Nmda Receptor Antagonists with Preference For GLUN2A Over GLUN2B Subunits. Proc. Natl. Acad. Sci. V. 114 E6942 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28760974
DOI: 10.1073/PNAS.1707752114