Bromine in PDB 5xwg: Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion

The structure of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion, PDB code: 5xwg was solved by H.Kanazawa, J.Kondo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.53 / 3.00
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	80.544, 80.544, 80.544, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 22.6

The structure of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion also contains other interesting chemical elements:

Strontium

(Sr)

3 atoms

The binding sites of Bromine atom in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion (pdb code 5xwg). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion, PDB code: 5xwg:

Bromine binding site 1 out of 1 in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Br9 b:0.5 occ:1.00 BR A:5BU9 0.0 0.5 1.0 C5 A:5BU9 1.9 84.8 1.0 C6 A:5BU9 2.8 86.5 1.0 C4 A:5BU9 2.9 92.8 1.0 O4 A:5BU9 3.1 96.9 1.0 C5 A:U8 3.4 81.8 1.0 C4 A:U8 3.4 84.8 1.0 N3 A:U8 3.5 80.9 1.0 C6 A:U8 3.5 72.9 1.0 N1 A:U8 3.6 82.1 1.0 C2 A:U8 3.6 86.7 1.0 OP2 A:5BU9 4.0 97.2 1.0 O4 A:U8 4.0 88.1 1.0 C2' A:U8 4.1 83.8 1.0 N4 A:C10 4.1 0.9 1.0 N1 A:5BU9 4.1 94.4 1.0 N3 A:5BU9 4.1 93.5 1.0 C3' A:U8 4.2 78.6 1.0 O2 A:U8 4.3 83.0 1.0 C1' A:U8 4.4 81.8 1.0 O5' A:5BU9 4.6 79.2 1.0 C2 A:5BU9 4.7 96.5 1.0 C4 A:C10 4.7 99.0 1.0 C5 A:C10 4.7 97.7 1.0 P A:5BU9 4.8 0.5 1.0

H.Kanazawa, J.Kondo. Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Single Metal Ion. J. Inorg. Biochem. V. 176 140 2017.
ISSN: ISSN 1873-3344
PubMed: 28898762
DOI: 10.1016/J.JINORGBIO.2017.08.029