Bromine in PDB 5y24: Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide

The structure of Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide, PDB code: 5y24 was solved by Q.Wang, Z.Y.Guan, T.T.Zou, P.Yin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.20 / 1.92
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	33.550, 119.605, 214.359, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 24.9

The binding sites of Bromine atom in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide (pdb code 5y24). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide, PDB code: 5y24:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Br401 b:41.1 occ:0.80 O A:HOH693 1.9 46.1 1.0 SG A:CYS304 2.4 28.8 1.0 CB A:CYS304 3.3 33.8 1.0 CD1 A:PHE305 3.7 33.2 1.0 C A:CYS304 3.8 26.2 1.0 N A:PHE305 3.8 25.5 1.0 CD1 A:ILE288 3.8 35.9 1.0 CE1 A:PHE305 3.9 39.2 1.0 O A:CYS304 4.0 25.3 1.0 CA A:CYS304 4.1 26.2 1.0 CA A:PHE305 4.4 30.4 1.0 CZ A:PHE290 4.4 41.1 1.0 CG A:PHE305 4.5 35.9 1.0 O A:GLN301 4.7 25.6 1.0 CZ A:PHE305 4.7 42.1 1.0 CE1 A:PHE290 5.0 43.2 1.0

Bromine binding site 2 out of 5 in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Br402 b:38.5 occ:0.65 O A:HOH658 2.1 45.5 1.0 O A:HOH690 2.1 56.8 1.0 SG A:CYS347 2.1 43.3 1.0 CB A:CYS347 3.0 37.8 1.0 CA A:CYS347 3.5 37.3 1.0 CD1 A:TYR335 4.0 36.0 1.0 N A:CYS347 4.0 35.9 1.0 CE1 A:TYR335 4.2 40.3 1.0 ND2 A:ASN344 4.3 63.3 1.0 CB A:LYS338 4.4 39.4 1.0 CD A:LYS338 4.7 45.9 1.0 OE1 A:GLU342 4.8 69.4 1.0 C A:CYS347 4.8 30.3 1.0 C A:ALA346 4.8 38.2 1.0

Bromine binding site 3 out of 5 in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Br403 b:56.5 occ:0.60 O A:HOH745 2.2 77.0 1.0 SG A:CYS107 2.5 72.1 1.0 CB A:CYS107 2.9 65.8 1.0 CA A:CYS107 3.5 63.1 1.0 C A:CYS107 4.2 56.7 1.0 O A:SER106 4.4 68.1 1.0 N A:CYS107 4.7 61.9 1.0 C A:SER106 5.0 66.3 1.0 O A:CYS107 5.0 57.0 1.0

Bromine binding site 4 out of 5 in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Br401 b:49.4 occ:1.00 O B:HOH647 1.7 34.6 1.0 SG B:CYS304 2.4 30.2 1.0 CB B:CYS304 3.1 26.3 1.0 CD1 B:PHE305 3.6 32.9 1.0 C B:CYS304 3.7 29.4 1.0 CD1 B:ILE288 3.7 41.1 1.0 N B:PHE305 3.7 29.1 1.0 CE1 B:PHE305 3.8 37.0 1.0 CA B:CYS304 4.0 26.4 1.0 O B:CYS304 4.0 28.4 1.0 CA B:PHE305 4.2 27.4 1.0 CG B:PHE305 4.4 30.6 1.0 O B:GLN301 4.6 25.6 1.0 CZ B:PHE290 4.6 31.7 1.0 CZ B:PHE305 4.7 30.1 1.0 CD1 B:PHE308 4.9 34.2 1.0 CB B:PHE305 5.0 25.4 1.0

Bromine binding site 5 out of 5 in the Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of Aimr From Bacillus Phage Spbeta in Complex with Its Signalling Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Br402 b:39.5 occ:0.70 O B:HOH653 2.0 51.2 1.0 O B:HOH625 2.0 69.8 1.0 SG B:CYS347 2.1 33.9 1.0 CB B:CYS347 2.9 28.8 1.0 CA B:CYS347 3.5 27.9 1.0 N B:CYS347 4.0 33.4 1.0 CD1 B:TYR335 4.0 40.9 1.0 CB B:LYS338 4.1 33.0 1.0 CE1 B:TYR335 4.3 47.3 1.0 ND2 B:ASN344 4.5 49.1 1.0 CG B:LYS338 4.8 37.8 1.0 C B:ALA346 4.8 31.2 1.0 C B:CYS347 4.8 21.1 1.0 OE1 B:GLU342 5.0 65.9 1.0

Q.Wang, Z.Guan, K.Pei, J.Wang, Z.Liu, P.Yin, D.Peng, T.Zou. Structural Basis of the Arbitrium Peptide-Aimr Communication System in the Phage Lysis-Lysogeny Decision. Nat Microbiol V. 3 1266 2018.
ISSN: ESSN 2058-5276
PubMed: 30224798
DOI: 10.1038/S41564-018-0239-Y