Bromine in PDB 5y2f: Human SIRT6 in Complex with Allosteric Activator Mdl-801

The structure of Human SIRT6 in Complex with Allosteric Activator Mdl-801, PDB code: 5y2f was solved by J.Zhang, Z.Huang, K.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	114.85 / 2.53
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	162.422, 162.422, 162.422, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 21.7

The structure of Human SIRT6 in Complex with Allosteric Activator Mdl-801 also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Zinc	(Zn)	1 atom
Chlorine	(Cl)	2 atoms

The binding sites of Bromine atom in the Human SIRT6 in Complex with Allosteric Activator Mdl-801 (pdb code 5y2f). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Human SIRT6 in Complex with Allosteric Activator Mdl-801, PDB code: 5y2f:

Bromine binding site 1 out of 1 in the Human SIRT6 in Complex with Allosteric Activator Mdl-801


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Human SIRT6 in Complex with Allosteric Activator Mdl-801 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br402 b:0.6 occ:1.00 BR1 A:8L9402 0.0 0.6 1.0 C38 A:8L9402 1.9 1.0 1.0 C36 A:8L9402 2.8 0.8 1.0 C39 A:8L9402 2.9 0.6 1.0 F1 A:8L9402 3.1 0.2 1.0 C3 A:GOL408 3.2 1.0 1.0 O3 A:GOL408 3.5 0.0 1.0 C35 A:8L9402 4.2 0.4 1.0 C40 A:8L9402 4.2 0.3 1.0 C2 A:GOL408 4.6 0.7 1.0 C42 A:8L9402 4.7 0.7 1.0 O A:GLY153 4.8 62.8 1.0 O1 A:GOL408 4.9 0.9 1.0 CA A:GLY153 5.0 53.4 1.0 C1 A:GOL408 5.0 0.8 1.0

Z.Huang, J.Zhao, W.Deng, Y.Chen, J.Shang, K.Song, L.Zhang, C.Wang, S.Lu, X.Yang, B.He, J.Min, H.Hu, M.Tan, J.Xu, Q.Zhang, J.Zhong, X.Sun, Z.Mao, H.Lin, M.Xiao, Y.E.Chin, H.Jiang, Y.Xu, G.Chen, J.Zhang. Identification of A Cellularly Active SIRT6 Allosteric Activator. Nat. Chem. Biol. V. 14 1118 2018.
ISSN: ESSN 1552-4469
PubMed: 30374165
DOI: 10.1038/S41589-018-0150-0