Bromine in PDB 5y3n: Structure of TRAP1 Complexed with DN401

The structure of Structure of TRAP1 Complexed with DN401, PDB code: 5y3n was solved by H.Jeong, H.K.Park, S.Kang, B.H.Kang, C.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.71 / 2.40
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.410, 69.410, 252.159, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.7

The structure of Structure of TRAP1 Complexed with DN401 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Bromine atom in the Structure of TRAP1 Complexed with DN401 (pdb code 5y3n). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure of TRAP1 Complexed with DN401, PDB code: 5y3n:

Bromine binding site 1 out of 1 in the Structure of TRAP1 Complexed with DN401


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of TRAP1 Complexed with DN401 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br601 b:0.3 occ:1.00 BR1 A:8MF601 0.0 0.3 1.0 C12 A:8MF601 1.9 96.4 1.0 C13 A:8MF601 2.9 89.6 1.0 C11 A:8MF601 2.9 84.8 1.0 C10 A:8MF601 3.2 63.7 1.0 N08 A:8MF601 3.5 71.5 1.0 O A:HOH726 3.7 81.0 1.0 N07 A:8MF601 3.8 60.4 1.0 O A:GLY202 3.8 0.3 1.0 CB A:ASN171 3.9 0.6 1.0 O A:ASN171 4.1 0.2 1.0 C14 A:8MF601 4.2 80.5 1.0 C16 A:8MF601 4.2 75.6 1.0 CE1 A:TYR206 4.5 0.5 1.0 ND2 A:ASN171 4.6 0.1 1.0 C15 A:8MF601 4.7 77.7 1.0 CG A:ASN171 4.8 0.1 1.0 CB A:PHE205 4.8 64.7 1.0 C A:ASN171 4.8 1.0 1.0 C09 A:8MF601 4.8 60.9 1.0 CB A:PHE201 4.8 0.6 1.0 C A:GLY202 4.9 0.4 1.0 CA A:ASN171 5.0 0.5 1.0

H.K.Park, H.Jeong, E.Ko, G.Lee, J.E.Lee, S.K.Lee, A.J.Lee, J.Y.Im, S.Hu, S.H.Kim, J.H.Lee, C.Lee, S.Kang, B.H.Kang. Paralog Specificity Determines Subcellular Distribution, Action Mechanism, and Anticancer Activity of TRAP1 Inhibitors. J. Med. Chem. V. 60 7569 2017.
ISSN: ISSN 1520-4804
PubMed: 28816449
DOI: 10.1021/ACS.JMEDCHEM.7B00978