Bromine in PDB 6arz: Structure of A Phage Anti-Crispr Protein
Protein crystallography data
The structure of Structure of A Phage Anti-Crispr Protein, PDB code: 6arz
was solved by
C.Calmettes,
M.Shah,
A.Pawluk,
A.R.Davidson,
K.L.Maxwell,
T.F.Moraes,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.18 /
2.50
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
98.137,
63.959,
59.701,
90.00,
100.94,
90.00
|
R / Rfree (%)
|
18 /
22.1
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Structure of A Phage Anti-Crispr Protein
(pdb code 6arz). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the
Structure of A Phage Anti-Crispr Protein, PDB code: 6arz:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
Bromine binding site 1 out
of 5 in 6arz
Go back to
Bromine Binding Sites List in 6arz
Bromine binding site 1 out
of 5 in the Structure of A Phage Anti-Crispr Protein
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Structure of A Phage Anti-Crispr Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br201
b:1.0
occ:0.70
|
NZ
|
A:LYS75
|
3.1
|
87.2
|
1.0
|
NE2
|
B:GLN39
|
3.4
|
56.3
|
1.0
|
CG
|
B:GLN39
|
3.5
|
45.5
|
1.0
|
CE
|
A:LYS75
|
3.6
|
85.5
|
1.0
|
CD
|
B:GLN39
|
3.7
|
53.4
|
1.0
|
CE2
|
B:PHE38
|
4.3
|
55.8
|
1.0
|
CD2
|
B:PHE38
|
4.4
|
56.6
|
1.0
|
CD1
|
B:LEU35
|
4.5
|
60.5
|
1.0
|
OE1
|
B:GLN39
|
4.7
|
57.0
|
1.0
|
CD
|
A:LYS75
|
4.7
|
83.2
|
1.0
|
CB
|
B:GLN39
|
4.8
|
41.1
|
1.0
|
|
Bromine binding site 2 out
of 5 in 6arz
Go back to
Bromine Binding Sites List in 6arz
Bromine binding site 2 out
of 5 in the Structure of A Phage Anti-Crispr Protein
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Structure of A Phage Anti-Crispr Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br202
b:89.7
occ:0.70
|
O
|
B:HOH327
|
3.0
|
53.2
|
1.0
|
OG
|
B:SER34
|
3.0
|
53.1
|
1.0
|
NE2
|
B:GLN9
|
3.3
|
62.1
|
1.0
|
O
|
B:HOH329
|
3.3
|
50.5
|
1.0
|
CD2
|
B:LEU5
|
3.8
|
41.2
|
1.0
|
CB
|
B:SER34
|
4.0
|
49.5
|
1.0
|
CD1
|
B:LEU5
|
4.1
|
40.7
|
1.0
|
CA
|
B:SER34
|
4.2
|
45.0
|
1.0
|
CG
|
B:LEU5
|
4.2
|
41.1
|
1.0
|
CD
|
B:GLN9
|
4.3
|
59.5
|
1.0
|
CG
|
B:GLN9
|
4.4
|
54.8
|
1.0
|
N
|
B:SER34
|
4.8
|
42.8
|
1.0
|
|
Bromine binding site 3 out
of 5 in 6arz
Go back to
Bromine Binding Sites List in 6arz
Bromine binding site 3 out
of 5 in the Structure of A Phage Anti-Crispr Protein
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Structure of A Phage Anti-Crispr Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br203
b:78.3
occ:0.70
|
NE
|
B:ARG56
|
3.0
|
62.4
|
1.0
|
NH2
|
B:ARG56
|
3.2
|
64.7
|
1.0
|
O
|
B:HOH325
|
3.2
|
53.9
|
1.0
|
CZ
|
B:ARG56
|
3.5
|
63.3
|
1.0
|
CA
|
B:TYR53
|
3.9
|
47.9
|
1.0
|
CD1
|
B:TYR53
|
4.1
|
53.9
|
1.0
|
CD
|
B:ARG56
|
4.1
|
57.5
|
1.0
|
CB
|
B:TYR53
|
4.1
|
47.5
|
1.0
|
O
|
B:HOH306
|
4.4
|
46.7
|
1.0
|
N
|
B:TYR53
|
4.5
|
42.5
|
1.0
|
CB
|
B:ARG56
|
4.5
|
43.4
|
1.0
|
CG
|
B:TYR53
|
4.6
|
48.5
|
1.0
|
CG
|
B:ARG56
|
4.8
|
53.4
|
1.0
|
NH1
|
B:ARG56
|
4.8
|
57.9
|
1.0
|
C
|
B:TYR53
|
5.0
|
50.7
|
1.0
|
O
|
B:TYR53
|
5.0
|
48.8
|
1.0
|
C
|
B:ASN52
|
5.0
|
40.5
|
1.0
|
|
Bromine binding site 4 out
of 5 in 6arz
Go back to
Bromine Binding Sites List in 6arz
Bromine binding site 4 out
of 5 in the Structure of A Phage Anti-Crispr Protein
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Structure of A Phage Anti-Crispr Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br204
b:54.9
occ:0.30
|
N
|
B:TYR91
|
3.2
|
65.5
|
1.0
|
CA
|
B:VAL90
|
3.4
|
67.3
|
1.0
|
CG1
|
B:VAL90
|
3.5
|
75.9
|
1.0
|
C
|
B:VAL90
|
3.8
|
63.6
|
1.0
|
CD2
|
B:TYR91
|
3.8
|
69.1
|
1.0
|
CB
|
B:VAL90
|
3.9
|
75.4
|
1.0
|
O
|
B:ARG89
|
4.0
|
74.0
|
1.0
|
CD1
|
C:LEU35
|
4.2
|
47.3
|
1.0
|
CA
|
B:TYR91
|
4.3
|
61.9
|
1.0
|
CB
|
B:TYR91
|
4.3
|
60.8
|
1.0
|
CG2
|
B:VAL90
|
4.4
|
80.5
|
1.0
|
O
|
B:TYR91
|
4.5
|
76.4
|
1.0
|
N
|
B:VAL90
|
4.5
|
67.3
|
1.0
|
CG
|
B:TYR91
|
4.6
|
64.2
|
1.0
|
CE2
|
C:PHE38
|
4.6
|
44.3
|
1.0
|
O
|
B:HOH326
|
4.7
|
61.3
|
1.0
|
C
|
B:ARG89
|
4.7
|
68.0
|
1.0
|
C
|
B:TYR91
|
4.8
|
69.7
|
1.0
|
CE2
|
B:TYR91
|
4.8
|
68.4
|
1.0
|
CD2
|
C:PHE38
|
4.9
|
43.9
|
1.0
|
O
|
B:HOH317
|
4.9
|
52.9
|
1.0
|
|
Bromine binding site 5 out
of 5 in 6arz
Go back to
Bromine Binding Sites List in 6arz
Bromine binding site 5 out
of 5 in the Structure of A Phage Anti-Crispr Protein
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Structure of A Phage Anti-Crispr Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br201
b:61.0
occ:0.45
|
O
|
C:HOH322
|
2.8
|
44.7
|
1.0
|
O
|
C:HOH330
|
3.0
|
51.2
|
1.0
|
OG
|
C:SER34
|
3.1
|
47.6
|
1.0
|
O
|
C:HOH328
|
3.1
|
49.2
|
1.0
|
NE2
|
C:GLN9
|
3.4
|
57.6
|
1.0
|
CB
|
C:SER34
|
4.0
|
42.9
|
1.0
|
CD2
|
C:LEU5
|
4.1
|
31.9
|
1.0
|
CA
|
C:SER34
|
4.1
|
35.2
|
1.0
|
CD
|
C:GLN9
|
4.6
|
57.3
|
1.0
|
NE
|
C:ARG89
|
4.6
|
25.3
|
1.0
|
CD1
|
C:LEU5
|
4.7
|
33.7
|
1.0
|
CG
|
C:LEU5
|
4.7
|
34.7
|
1.0
|
CB
|
C:VAL37
|
4.8
|
33.5
|
1.0
|
CG1
|
C:VAL37
|
4.9
|
30.9
|
1.0
|
CG
|
C:GLN9
|
4.9
|
47.5
|
1.0
|
CG2
|
C:VAL37
|
4.9
|
33.6
|
1.0
|
N
|
C:SER34
|
5.0
|
31.1
|
1.0
|
|
Reference:
A.Pawluk,
M.Shah,
M.Mejdani,
C.Calmettes,
T.F.Moraes,
A.R.Davidson,
K.L.Maxwell.
Disabling A Type I-E Crispr-Cas Nuclease with A Bacteriophage-Encoded Anti-Crispr Protein. Mbio V. 8 2017.
ISSN: ESSN 2150-7511
PubMed: 29233895
DOI: 10.1128/MBIO.01751-17
Page generated: Thu Jul 11 01:28:07 2024
|