Bromine in PDB 6d0g: 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii

Enzymatic activity of 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii

All present enzymatic activity of 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii:
1.13.11.24;

Protein crystallography data

The structure of 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii, PDB code: 6d0g was solved by G.Minasov, L.Shuvalova, J.S.Brunzelle, I.Dubrovska, O.Kiryukhina, M.Endres, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.78 / 1.78
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 41.883, 73.616, 202.741, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21

Other elements in 6d0g:

The structure of 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii (pdb code 6d0g). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii, PDB code: 6d0g:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 6d0g

Go back to Bromine Binding Sites List in 6d0g
Bromine binding site 1 out of 2 in the 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br402

b:29.8
occ:0.50
OG1 A:THR64 3.0 25.2 1.0
BR A:BR403 3.3 29.4 0.5
N A:VAL63 3.6 22.8 1.0
C A:VAL63 3.6 22.2 1.0
N A:THR64 3.8 22.6 1.0
CA A:VAL63 3.8 22.2 1.0
O A:VAL63 3.9 21.3 1.0
C A:PRO62 4.0 24.3 1.0
CB A:PRO62 4.0 26.6 1.0
CB A:THR64 4.2 24.6 1.0
OE1 A:GLN130 4.4 43.1 1.0
O A:PRO62 4.5 24.2 1.0
CA A:THR64 4.5 23.5 1.0
CA A:PRO62 4.5 24.3 1.0
O A:HOH729 4.5 48.2 1.0
CD A:GLN130 4.5 36.8 1.0
CG A:GLN130 4.7 32.1 1.0
O A:HOH713 4.8 42.8 1.0

Bromine binding site 2 out of 2 in 6d0g

Go back to Bromine Binding Sites List in 6d0g
Bromine binding site 2 out of 2 in the 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3- Dioxygenase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br403

b:29.4
occ:0.50
O A:HOH729 3.2 48.2 1.0
BR A:BR402 3.3 29.8 0.5
OE1 A:GLN130 3.4 43.1 1.0
N A:VAL63 3.7 22.8 1.0
CB A:PRO62 3.7 26.6 1.0
O A:MSE131 3.7 21.1 1.0
CB A:GLU89 3.8 27.8 0.5
O A:VAL63 3.8 21.3 1.0
CA A:PRO62 3.8 24.3 1.0
CB A:GLN130 3.9 26.9 1.0
CB A:HIS132 3.9 21.4 1.0
C A:MSE131 4.0 21.8 1.0
N A:MSE131 4.0 22.4 1.0
CD A:GLN130 4.1 36.8 1.0
CB A:GLU89 4.1 28.5 0.5
C A:PRO62 4.2 24.3 1.0
CG A:GLN130 4.2 32.1 1.0
N A:HIS132 4.3 20.8 1.0
CG A:GLU89 4.3 29.5 0.5
CG A:GLU89 4.4 30.3 0.5
C A:VAL63 4.4 22.2 1.0
CA A:MSE131 4.6 23.0 1.0
CA A:HIS132 4.6 20.7 1.0
CA A:GLN130 4.6 23.6 1.0
CA A:VAL63 4.7 22.2 1.0
C A:GLN130 4.7 21.7 1.0
CG A:HIS132 4.9 21.8 1.0
CG A:PRO62 4.9 26.9 1.0

Reference:

G.Minasov, L.Shuvalova, J.S.Brunzelle, I.Dubrovska, O.Kiryukhina, M.Endres, W.F.Anderson, K.J.F.Satchell, A.Joachimiak. 1.78 Angstrom Resolution Crystal Structure of Quercetin 2,3-Dioxygenase From Acinetobacter Baumannii. To Be Published.
Page generated: Sat Dec 12 02:32:49 2020

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