Bromine in PDB 6erl: Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence

Bromine Binding Sites:

The binding sites of Bromine atom in the Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence (pdb code 6erl). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence, PDB code: 6erl:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 6erl

Go back to Bromine Binding Sites List in 6erl
Bromine binding site 1 out of 4 in the Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br4

b:0.0
occ:1.00
BR A:BGM4 0.0 0.0 1.0
C8 A:BGM4 1.9 0.0 1.0
N7 A:BGM4 2.8 0.0 1.0
H1' A:BGM4 2.9 0.0 1.0
N9 A:BGM4 2.9 0.0 1.0
O4' A:DG5 3.4 0.0 1.0
C1' A:BGM4 3.4 0.0 1.0
H21 A:BGM8 3.8 0.0 1.0
H5' A:DG5 3.9 0.0 1.0
H4' A:DG5 4.0 0.0 1.0
C5 A:BGM4 4.0 0.0 1.0
C4 A:BGM4 4.0 0.0 1.0
H22 A:BGM8 4.1 0.0 1.0
H1' A:DG5 4.1 0.0 1.0
C1' A:DG5 4.2 0.0 1.0
C4' A:DG5 4.2 0.0 1.0
N2 A:BGM8 4.3 0.0 1.0
H2' A:BGM4 4.4 0.0 1.0
O4' A:BGM4 4.4 0.0 1.0
N9 A:DG5 4.4 0.0 1.0
C2' A:BGM4 4.5 0.0 1.0
C5' A:DG5 4.6 0.0 1.0
C4 A:DG5 4.7 0.0 1.0
H2 A:DA3 4.7 0.0 1.0
N3 A:DG5 4.8 0.0 1.0

Bromine binding site 2 out of 4 in 6erl

Go back to Bromine Binding Sites List in 6erl
Bromine binding site 2 out of 4 in the Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br8

b:0.0
occ:1.00
BR A:BGM8 0.0 0.0 1.0
C8 A:BGM8 1.9 0.0 1.0
N7 A:BGM8 2.8 0.0 1.0
H1' A:BGM8 2.9 0.0 1.0
N9 A:BGM8 2.9 0.0 1.0
H4' A:DA12 3.0 0.0 1.0
O4' A:DG9 3.4 0.0 1.0
C1' A:BGM8 3.4 0.0 1.0
H5' A:DG9 3.6 0.0 1.0
H21 A:BGM13 3.6 0.0 1.0
H2' A:BGM8 3.8 0.0 1.0
H22 A:BGM13 3.9 0.0 1.0
C5 A:BGM8 3.9 0.0 1.0
O4 A:DT1 4.0 0.0 1.0
C4' A:DA12 4.0 0.0 1.0
C4 A:BGM8 4.0 0.0 1.0
N2 A:BGM13 4.2 0.0 1.0
H5' A:DA12 4.2 0.0 1.0
C2' A:BGM8 4.2 0.0 1.0
C4' A:DG9 4.3 0.0 1.0
H5'' A:DA12 4.3 0.0 1.0
C1' A:DG9 4.4 0.0 1.0
N9 A:DG9 4.4 0.0 1.0
C5' A:DG9 4.4 0.0 1.0
H4' A:DG9 4.4 0.0 1.0
C5' A:DA12 4.5 0.0 1.0
O4' A:DA12 4.5 0.0 1.0
O4' A:BGM8 4.6 0.0 1.0
C4 A:DG9 4.6 0.0 1.0
H1' A:DG9 4.7 0.0 1.0
O3' A:DA12 4.8 0.0 1.0
H2'' A:BGM8 4.9 0.0 1.0
C8 A:DG9 4.9 0.0 1.0
N3 A:DG9 4.9 0.0 1.0

Bromine binding site 3 out of 4 in 6erl

Go back to Bromine Binding Sites List in 6erl
Bromine binding site 3 out of 4 in the Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br13

b:0.0
occ:1.00
BR A:BGM13 0.0 0.0 1.0
C8 A:BGM13 1.9 0.0 1.0
N7 A:BGM13 2.8 0.0 1.0
H1' A:BGM13 2.9 0.0 1.0
N9 A:BGM13 2.9 0.0 1.0
O4' A:DG14 3.4 0.0 1.0
C1' A:BGM13 3.4 0.0 1.0
H21 A:BGM17 3.8 0.0 1.0
H5' A:DG14 3.9 0.0 1.0
C5 A:BGM13 4.0 0.0 1.0
H4' A:DG14 4.0 0.0 1.0
C4 A:BGM13 4.0 0.0 1.0
H1' A:DG14 4.0 0.0 1.0
H22 A:BGM17 4.1 0.0 1.0
C1' A:DG14 4.1 0.0 1.0
C4' A:DG14 4.2 0.0 1.0
N2 A:BGM17 4.3 0.0 1.0
N9 A:DG14 4.4 0.0 1.0
H2' A:BGM13 4.4 0.0 1.0
O4' A:BGM13 4.5 0.0 1.0
C2' A:BGM13 4.5 0.0 1.0
C5' A:DG14 4.6 0.0 1.0
C4 A:DG14 4.7 0.0 1.0
N3 A:DG14 4.9 0.0 1.0

Bromine binding site 4 out of 4 in 6erl

Go back to Bromine Binding Sites List in 6erl
Bromine binding site 4 out of 4 in the Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Quadruplex with Flipped Tetrad Formed By the C-Myc Promoter Sequence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br17

b:0.0
occ:1.00
BR A:BGM17 0.0 0.0 1.0
C8 A:BGM17 1.9 0.0 1.0
N7 A:BGM17 2.8 0.0 1.0
H1' A:BGM17 2.9 0.0 1.0
N9 A:BGM17 2.9 0.0 1.0
C1' A:BGM17 3.4 0.0 1.0
O4' A:DG18 3.4 0.0 1.0
H21 A:BGM4 3.6 0.0 1.0
H2' A:BGM17 3.7 0.0 1.0
H22 A:BGM4 3.9 0.0 1.0
H5' A:DG18 3.9 0.0 1.0
C5 A:BGM17 4.0 0.0 1.0
C4 A:BGM17 4.0 0.0 1.0
C2' A:BGM17 4.1 0.0 1.0
N2 A:BGM4 4.2 0.0 1.0
N9 A:DG18 4.2 0.0 1.0
C4 A:DG18 4.2 0.0 1.0
N3 A:DG18 4.3 0.0 1.0
H2'' A:DA3 4.3 0.0 1.0
C1' A:DG18 4.3 0.0 1.0
H22 A:DG2 4.4 0.0 1.0
H21 A:DG2 4.4 0.0 1.0
C4' A:DG18 4.4 0.0 1.0
N2 A:DG2 4.5 0.0 1.0
H4' A:DG18 4.5 0.0 1.0
O4' A:BGM17 4.7 0.0 1.0
H1' A:DG18 4.7 0.0 1.0
C5' A:DG18 4.7 0.0 1.0
H2'' A:BGM17 4.8 0.0 1.0
C8 A:DG18 4.8 0.0 1.0
C5 A:DG18 4.8 0.0 1.0
H2' A:DA3 4.9 0.0 1.0
C2 A:DG18 4.9 0.0 1.0

Reference:

B.Karg, K.Weisz. Loop Length Affects Syn-Anti Conformational Rearrangements in Parallel G-Quadruplexes. Chemistry 2018.
ISSN: ISSN 1521-3765
PubMed: 29756658
DOI: 10.1002/CHEM.201801851
Page generated: Sat Dec 12 02:33:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy