Bromine in PDB 6faq: Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Protein crystallography data
The structure of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr, PDB code: 6faq
was solved by
B.Shaanan,
N.Kutnowski,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.20 /
1.95
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
41.149,
76.406,
42.098,
90.00,
109.47,
90.00
|
R / Rfree (%)
|
18.9 /
23.6
|
Bromine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Bromine atom in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
(pdb code 6faq). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 24 binding sites of Bromine where determined in the
Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr, PDB code: 6faq:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Bromine binding site 1 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 1 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:37.3
occ:0.73
|
HH12
|
A:ARG38
|
2.4
|
46.6
|
1.0
|
HH22
|
A:ARG38
|
2.7
|
48.2
|
1.0
|
HD23
|
A:LEU34
|
3.0
|
46.2
|
1.0
|
NH1
|
A:ARG38
|
3.2
|
38.9
|
1.0
|
HB3
|
A:LEU34
|
3.2
|
36.2
|
1.0
|
HD2
|
A:TYR32
|
3.2
|
59.1
|
1.0
|
O
|
A:HOH381
|
3.3
|
33.6
|
1.0
|
NH2
|
A:ARG38
|
3.4
|
40.2
|
1.0
|
HB2
|
A:ALA35
|
3.8
|
32.8
|
1.0
|
CZ
|
A:ARG38
|
3.8
|
38.2
|
1.0
|
HH11
|
A:ARG38
|
3.9
|
46.6
|
1.0
|
HB2
|
A:TYR32
|
3.9
|
44.2
|
1.0
|
CD2
|
A:LEU34
|
3.9
|
38.5
|
1.0
|
HG
|
A:LEU34
|
4.0
|
41.1
|
1.0
|
CB
|
A:LEU34
|
4.1
|
30.2
|
1.0
|
H
|
A:ALA35
|
4.1
|
30.8
|
1.0
|
CD2
|
A:TYR32
|
4.2
|
49.3
|
1.0
|
HH21
|
A:ARG38
|
4.2
|
48.2
|
1.0
|
CG
|
A:LEU34
|
4.2
|
34.3
|
1.0
|
N
|
A:ALA35
|
4.3
|
25.7
|
1.0
|
HD21
|
A:LEU34
|
4.4
|
46.2
|
1.0
|
HA
|
A:ALA35
|
4.5
|
29.9
|
1.0
|
HD22
|
A:LEU34
|
4.5
|
46.2
|
1.0
|
CB
|
A:ALA35
|
4.6
|
27.3
|
1.0
|
HB2
|
A:LEU34
|
4.7
|
36.2
|
1.0
|
CB
|
A:TYR32
|
4.7
|
36.8
|
1.0
|
CA
|
A:ALA35
|
4.7
|
24.9
|
1.0
|
C
|
A:LEU34
|
4.7
|
26.5
|
1.0
|
HB3
|
A:TYR32
|
4.8
|
44.2
|
1.0
|
HE2
|
A:TYR32
|
4.9
|
66.3
|
1.0
|
CG
|
A:TYR32
|
4.9
|
43.5
|
1.0
|
CA
|
A:LEU34
|
5.0
|
27.2
|
1.0
|
|
Bromine binding site 2 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 2 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br202
b:44.7
occ:0.67
|
HD3
|
A:ARG105
|
2.8
|
33.2
|
1.0
|
HH11
|
A:ARG108
|
3.1
|
59.2
|
1.0
|
HD2
|
A:ARG108
|
3.2
|
52.5
|
1.0
|
HA
|
A:ARG105
|
3.3
|
32.4
|
1.0
|
O
|
A:HOH329
|
3.4
|
42.7
|
1.0
|
HB3
|
A:ASP104
|
3.5
|
45.6
|
1.0
|
HE
|
A:ARG105
|
3.6
|
34.3
|
1.0
|
CD
|
A:ARG105
|
3.7
|
27.7
|
1.0
|
HG2
|
A:ARG105
|
3.8
|
33.0
|
1.0
|
HB2
|
A:ARG108
|
3.8
|
46.0
|
1.0
|
O
|
A:ASP104
|
3.8
|
24.9
|
1.0
|
HZ
|
B:PHE85
|
3.9
|
35.1
|
1.0
|
C
|
A:ASP104
|
3.9
|
29.6
|
1.0
|
NH1
|
A:ARG108
|
3.9
|
49.3
|
1.0
|
HB2
|
A:ASP104
|
3.9
|
45.6
|
1.0
|
N
|
A:ARG105
|
4.0
|
28.1
|
1.0
|
CA
|
A:ARG105
|
4.0
|
27.0
|
1.0
|
NE
|
A:ARG105
|
4.1
|
28.6
|
1.0
|
CB
|
A:ASP104
|
4.1
|
38.0
|
1.0
|
CD
|
A:ARG108
|
4.1
|
43.8
|
1.0
|
CG
|
A:ARG105
|
4.2
|
27.5
|
1.0
|
HH12
|
A:ARG108
|
4.2
|
59.2
|
1.0
|
HB3
|
A:ARG108
|
4.3
|
46.0
|
1.0
|
HD3
|
A:ARG108
|
4.3
|
52.5
|
1.0
|
H
|
A:ARG105
|
4.3
|
33.8
|
1.0
|
HD2
|
A:ARG105
|
4.4
|
33.2
|
1.0
|
CB
|
A:ARG108
|
4.5
|
38.3
|
1.0
|
CA
|
A:ASP104
|
4.7
|
33.4
|
1.0
|
CZ
|
B:PHE85
|
4.7
|
29.2
|
1.0
|
CB
|
A:ARG105
|
4.7
|
26.2
|
1.0
|
HZ
|
A:PHE99
|
4.8
|
28.5
|
1.0
|
CG
|
A:ARG108
|
4.9
|
42.8
|
1.0
|
CZ
|
A:ARG108
|
4.9
|
49.8
|
1.0
|
|
Bromine binding site 3 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 3 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br203
b:36.1
occ:0.42
|
BR
|
A:BR203
|
0.0
|
36.1
|
0.4
|
BR
|
A:BR203
|
2.5
|
84.0
|
0.6
|
H
|
A:LEU34
|
2.6
|
34.4
|
1.0
|
HB3
|
A:TYR32
|
2.8
|
44.2
|
1.0
|
HG23
|
A:THR75
|
3.1
|
91.5
|
1.0
|
H
|
A:GLY33
|
3.2
|
36.3
|
1.0
|
H
|
A:ASN76
|
3.4
|
74.9
|
1.0
|
N
|
A:LEU34
|
3.5
|
28.7
|
1.0
|
HB2
|
A:LEU34
|
3.5
|
36.2
|
1.0
|
HA
|
A:THR75
|
3.5
|
95.0
|
1.0
|
N
|
A:GLY33
|
3.6
|
30.2
|
1.0
|
HH
|
A:TYR54
|
3.7
|
54.2
|
1.0
|
CB
|
A:TYR32
|
3.8
|
36.8
|
1.0
|
HA3
|
A:GLY33
|
3.8
|
32.7
|
1.0
|
HB3
|
A:LEU34
|
3.8
|
36.2
|
1.0
|
O
|
A:HOH324
|
3.9
|
48.3
|
1.0
|
O
|
A:ASN76
|
4.0
|
50.3
|
1.0
|
CB
|
A:LEU34
|
4.0
|
30.2
|
1.0
|
HB2
|
A:TYR32
|
4.0
|
44.2
|
1.0
|
CG2
|
A:THR75
|
4.1
|
76.2
|
1.0
|
CA
|
A:GLY33
|
4.1
|
27.3
|
1.0
|
N
|
A:ASN76
|
4.1
|
62.5
|
1.0
|
C
|
A:GLY33
|
4.3
|
26.4
|
1.0
|
C
|
A:TYR32
|
4.3
|
30.1
|
1.0
|
O
|
A:HOH370
|
4.3
|
48.8
|
1.0
|
OH
|
A:TYR54
|
4.4
|
45.2
|
1.0
|
CA
|
A:THR75
|
4.4
|
79.1
|
1.0
|
CA
|
A:LEU34
|
4.4
|
27.2
|
1.0
|
HG22
|
A:THR75
|
4.4
|
91.5
|
1.0
|
CA
|
A:TYR32
|
4.5
|
32.6
|
1.0
|
HA
|
A:TYR32
|
4.5
|
39.1
|
1.0
|
HG21
|
A:THR75
|
4.5
|
91.5
|
1.0
|
CG
|
A:TYR32
|
4.7
|
43.5
|
1.0
|
CB
|
A:THR75
|
4.7
|
79.5
|
1.0
|
C
|
A:THR75
|
4.7
|
72.5
|
1.0
|
H
|
A:ALA35
|
4.9
|
30.8
|
1.0
|
HB2
|
A:ASN76
|
4.9
|
58.0
|
1.0
|
HD22
|
A:ASN76
|
4.9
|
56.6
|
1.0
|
HA
|
A:LEU34
|
4.9
|
32.7
|
1.0
|
C
|
A:ASN76
|
4.9
|
49.8
|
1.0
|
OG1
|
A:THR75
|
4.9
|
82.9
|
1.0
|
HD2
|
A:TYR32
|
5.0
|
59.1
|
1.0
|
|
Bromine binding site 4 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 4 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br203
b:84.0
occ:0.58
|
BR
|
A:BR203
|
0.0
|
84.0
|
0.6
|
HH
|
A:TYR54
|
2.4
|
54.2
|
1.0
|
BR
|
A:BR203
|
2.5
|
36.1
|
0.4
|
O
|
A:HOH370
|
2.8
|
48.8
|
1.0
|
HD22
|
A:ASN76
|
2.8
|
56.6
|
1.0
|
HE1
|
A:TYR54
|
2.9
|
48.8
|
1.0
|
H
|
A:ASN76
|
3.0
|
74.9
|
1.0
|
HA3
|
A:GLY33
|
3.0
|
32.7
|
1.0
|
OH
|
A:TYR54
|
3.2
|
45.2
|
1.0
|
H
|
A:GLY33
|
3.3
|
36.3
|
1.0
|
HB2
|
A:ASN76
|
3.3
|
58.0
|
1.0
|
CE1
|
A:TYR54
|
3.6
|
40.7
|
1.0
|
HE1
|
A:TYR78
|
3.6
|
38.5
|
1.0
|
ND2
|
A:ASN76
|
3.7
|
47.1
|
1.0
|
H
|
A:LEU34
|
3.8
|
34.4
|
1.0
|
O
|
A:HOH324
|
3.8
|
48.3
|
1.0
|
N
|
A:ASN76
|
3.8
|
62.5
|
1.0
|
CA
|
A:GLY33
|
3.8
|
27.3
|
1.0
|
CZ
|
A:TYR54
|
3.9
|
42.0
|
1.0
|
N
|
A:GLY33
|
3.9
|
30.2
|
1.0
|
HA
|
A:THR75
|
4.0
|
95.0
|
1.0
|
O
|
A:ASN76
|
4.1
|
50.3
|
1.0
|
CB
|
A:ASN76
|
4.1
|
48.4
|
1.0
|
HD21
|
A:ASN76
|
4.2
|
56.6
|
1.0
|
N
|
A:LEU34
|
4.3
|
28.7
|
1.0
|
CA
|
A:ASN76
|
4.4
|
53.4
|
1.0
|
CG
|
A:ASN76
|
4.4
|
48.1
|
1.0
|
C
|
A:GLY33
|
4.5
|
26.4
|
1.0
|
CE1
|
A:TYR78
|
4.6
|
32.0
|
1.0
|
HA2
|
A:GLY33
|
4.6
|
32.7
|
1.0
|
HB3
|
A:TYR32
|
4.7
|
44.2
|
1.0
|
C
|
A:ASN76
|
4.7
|
49.8
|
1.0
|
OH
|
A:TYR78
|
4.8
|
36.6
|
1.0
|
HG23
|
A:THR75
|
4.8
|
91.5
|
1.0
|
C
|
A:THR75
|
4.8
|
72.5
|
1.0
|
CA
|
A:THR75
|
4.8
|
79.1
|
1.0
|
CD1
|
A:TYR54
|
4.9
|
39.4
|
1.0
|
HB3
|
A:ASN76
|
4.9
|
58.0
|
1.0
|
HB2
|
A:LEU34
|
4.9
|
36.2
|
1.0
|
|
Bromine binding site 5 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 5 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br204
b:44.8
occ:0.64
|
O
|
A:HOH347
|
2.6
|
32.9
|
1.0
|
HD2
|
A:LYS20
|
2.9
|
46.1
|
1.0
|
HD2
|
B:LYS20
|
3.0
|
42.2
|
1.0
|
HA
|
A:ALA17
|
3.2
|
25.1
|
1.0
|
HA
|
B:ALA17
|
3.2
|
24.9
|
1.0
|
HD3
|
A:LYS20
|
3.6
|
46.1
|
1.0
|
HB2
|
B:ALA17
|
3.7
|
23.0
|
1.0
|
CD
|
A:LYS20
|
3.7
|
38.4
|
1.0
|
HB1
|
B:ALA17
|
3.7
|
23.0
|
1.0
|
HD3
|
B:LYS20
|
3.7
|
42.2
|
1.0
|
HB2
|
A:ALA17
|
3.7
|
25.0
|
1.0
|
CD
|
B:LYS20
|
3.8
|
35.2
|
1.0
|
HB2
|
B:LYS20
|
3.8
|
28.8
|
1.0
|
HB1
|
A:ALA17
|
3.8
|
25.0
|
1.0
|
HB2
|
A:LYS20
|
3.8
|
32.7
|
1.0
|
HZ3
|
A:LYS20
|
3.9
|
66.4
|
1.0
|
CB
|
B:ALA17
|
4.0
|
19.1
|
1.0
|
CA
|
B:ALA17
|
4.0
|
20.7
|
1.0
|
CA
|
A:ALA17
|
4.0
|
20.9
|
1.0
|
CB
|
A:ALA17
|
4.1
|
20.8
|
1.0
|
HZ3
|
B:LYS20
|
4.1
|
61.6
|
1.0
|
HB3
|
B:LYS20
|
4.3
|
28.8
|
1.0
|
HZ1
|
A:LYS20
|
4.4
|
66.4
|
1.0
|
HB3
|
A:LYS20
|
4.4
|
32.7
|
1.0
|
CB
|
B:LYS20
|
4.4
|
24.0
|
1.0
|
NZ
|
A:LYS20
|
4.4
|
55.3
|
1.0
|
CB
|
A:LYS20
|
4.5
|
27.3
|
1.0
|
CE
|
A:LYS20
|
4.6
|
47.4
|
1.0
|
CG
|
A:LYS20
|
4.7
|
32.1
|
1.0
|
CG
|
B:LYS20
|
4.7
|
27.5
|
1.0
|
HZ1
|
B:LYS20
|
4.7
|
61.6
|
1.0
|
NZ
|
B:LYS20
|
4.7
|
51.3
|
1.0
|
CE
|
B:LYS20
|
4.8
|
44.4
|
1.0
|
O
|
B:ALA17
|
4.8
|
19.2
|
1.0
|
O
|
A:ALA17
|
4.9
|
20.0
|
1.0
|
N
|
A:ALA17
|
4.9
|
22.5
|
1.0
|
HB3
|
B:ALA17
|
4.9
|
23.0
|
1.0
|
HG3
|
B:LYS20
|
4.9
|
33.0
|
1.0
|
N
|
B:ALA17
|
4.9
|
18.9
|
1.0
|
O
|
B:HOH322
|
5.0
|
41.7
|
1.0
|
C
|
B:ALA17
|
5.0
|
19.8
|
1.0
|
HG3
|
A:LYS20
|
5.0
|
38.5
|
1.0
|
HE3
|
A:LYS20
|
5.0
|
56.8
|
1.0
|
C
|
A:ALA17
|
5.0
|
20.8
|
1.0
|
|
Bromine binding site 6 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 6 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br205
b:35.4
occ:0.45
|
H
|
A:TYR32
|
2.7
|
39.1
|
1.0
|
HA
|
A:ARG31
|
2.8
|
42.5
|
1.0
|
O
|
A:HOH381
|
3.0
|
33.6
|
1.0
|
HB2
|
A:ALA35
|
3.1
|
32.8
|
1.0
|
HH11
|
A:ARG31
|
3.1
|
70.5
|
1.0
|
O
|
A:HOH353
|
3.3
|
48.5
|
1.0
|
HB3
|
A:ALA35
|
3.3
|
32.8
|
1.0
|
HG2
|
A:ARG31
|
3.4
|
50.3
|
1.0
|
HB1
|
A:ALA35
|
3.4
|
32.8
|
1.0
|
CB
|
A:ALA35
|
3.4
|
27.3
|
1.0
|
N
|
A:TYR32
|
3.5
|
32.6
|
1.0
|
HB3
|
A:ARG31
|
3.6
|
43.6
|
1.0
|
CA
|
A:ARG31
|
3.6
|
35.4
|
1.0
|
NH1
|
A:ARG31
|
3.7
|
58.7
|
1.0
|
HH12
|
A:ARG31
|
3.8
|
70.5
|
1.0
|
CB
|
A:ARG31
|
3.9
|
36.3
|
1.0
|
HB2
|
A:TYR32
|
4.0
|
44.2
|
1.0
|
CG
|
A:ARG31
|
4.1
|
41.9
|
1.0
|
C
|
A:ARG31
|
4.1
|
34.2
|
1.0
|
CG
|
A:TYR32
|
4.1
|
43.5
|
1.0
|
CD2
|
A:TYR32
|
4.2
|
49.3
|
1.0
|
HD2
|
A:TYR32
|
4.3
|
59.1
|
1.0
|
HD3
|
A:ARG31
|
4.3
|
52.6
|
1.0
|
CB
|
A:TYR32
|
4.4
|
36.8
|
1.0
|
O
|
A:ALA30
|
4.4
|
31.8
|
1.0
|
HH22
|
A:ARG38
|
4.5
|
48.2
|
1.0
|
CA
|
A:TYR32
|
4.5
|
32.6
|
1.0
|
CD1
|
A:TYR32
|
4.5
|
45.1
|
1.0
|
CE2
|
A:TYR32
|
4.6
|
55.3
|
1.0
|
CD
|
A:ARG31
|
4.7
|
43.9
|
1.0
|
HH21
|
A:ARG38
|
4.7
|
48.2
|
1.0
|
N
|
A:ARG31
|
4.8
|
32.7
|
1.0
|
CZ
|
A:ARG31
|
4.8
|
55.8
|
1.0
|
HG3
|
A:ARG31
|
4.8
|
50.3
|
1.0
|
HB2
|
A:ARG31
|
4.9
|
43.6
|
1.0
|
HD1
|
A:TYR32
|
4.9
|
54.2
|
1.0
|
NH2
|
A:ARG38
|
4.9
|
40.2
|
1.0
|
CA
|
A:ALA35
|
4.9
|
24.9
|
1.0
|
CE1
|
A:TYR32
|
5.0
|
49.3
|
1.0
|
CZ
|
A:TYR32
|
5.0
|
55.5
|
1.0
|
|
Bromine binding site 7 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 7 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br206
b:38.7
occ:0.58
|
H
|
A:PHE18
|
2.5
|
24.7
|
1.0
|
HB3
|
A:ALA17
|
2.9
|
25.0
|
1.0
|
HB
|
A:THR16
|
3.0
|
35.5
|
1.0
|
H
|
A:ALA17
|
3.1
|
27.0
|
1.0
|
HB2
|
A:PHE18
|
3.2
|
27.1
|
1.0
|
BR
|
A:BR211
|
3.2
|
35.8
|
0.4
|
HH21
|
A:ARG52
|
3.3
|
53.5
|
1.0
|
N
|
A:PHE18
|
3.3
|
20.6
|
1.0
|
O
|
A:HOH325
|
3.3
|
29.2
|
1.0
|
HH22
|
A:ARG52
|
3.4
|
53.5
|
1.0
|
N
|
A:ALA17
|
3.6
|
22.5
|
1.0
|
NH2
|
A:ARG52
|
3.6
|
44.5
|
1.0
|
HB3
|
A:PHE18
|
3.7
|
27.1
|
1.0
|
CB
|
A:ALA17
|
3.8
|
20.8
|
1.0
|
CB
|
A:PHE18
|
3.8
|
22.6
|
1.0
|
O
|
A:HOH331
|
3.8
|
42.9
|
1.0
|
CB
|
A:THR16
|
3.9
|
29.6
|
1.0
|
CA
|
A:ALA17
|
4.0
|
20.9
|
1.0
|
C
|
A:ALA17
|
4.1
|
20.8
|
1.0
|
CA
|
A:PHE18
|
4.2
|
20.7
|
1.0
|
HB2
|
A:ALA17
|
4.2
|
25.0
|
1.0
|
HG1
|
A:THR16
|
4.2
|
33.8
|
1.0
|
HA
|
B:THR16
|
4.2
|
27.8
|
1.0
|
OG1
|
A:THR16
|
4.3
|
28.1
|
1.0
|
O
|
A:HOH337
|
4.4
|
58.0
|
1.0
|
C
|
A:THR16
|
4.4
|
24.2
|
1.0
|
HB1
|
A:ALA17
|
4.4
|
25.0
|
1.0
|
HA
|
A:PHE18
|
4.6
|
24.9
|
1.0
|
CA
|
A:THR16
|
4.6
|
28.9
|
1.0
|
HA
|
A:THR16
|
4.7
|
34.7
|
1.0
|
O
|
A:HOH335
|
4.7
|
34.1
|
1.0
|
HG21
|
A:THR16
|
4.8
|
39.8
|
1.0
|
H
|
B:ALA17
|
4.8
|
22.7
|
1.0
|
CG2
|
A:THR16
|
4.9
|
33.2
|
1.0
|
O
|
B:HOH321
|
4.9
|
44.4
|
1.0
|
CZ
|
A:ARG52
|
4.9
|
45.4
|
1.0
|
H
|
A:GLN19
|
4.9
|
28.2
|
1.0
|
HA
|
A:ALA17
|
5.0
|
25.1
|
1.0
|
|
Bromine binding site 8 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 8 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br207
b:79.5
occ:0.68
|
HE
|
A:ARG106
|
2.7
|
40.5
|
0.4
|
HA
|
A:ALA103
|
2.9
|
41.0
|
1.0
|
HB1
|
B:ALA117
|
3.0
|
48.2
|
1.0
|
HD2
|
A:ARG106
|
3.3
|
39.1
|
0.6
|
NE
|
A:ARG106
|
3.5
|
33.8
|
0.4
|
HD3
|
A:ARG106
|
3.5
|
39.2
|
0.4
|
HD12
|
B:LEU120
|
3.5
|
54.8
|
1.0
|
HB2
|
A:ALA103
|
3.6
|
42.0
|
1.0
|
HH11
|
A:ARG106
|
3.6
|
42.7
|
0.6
|
CA
|
A:ALA103
|
3.7
|
34.1
|
1.0
|
CB
|
B:ALA117
|
3.8
|
40.2
|
1.0
|
HB2
|
B:ALA117
|
3.9
|
48.2
|
1.0
|
N
|
A:ALA103
|
4.0
|
33.4
|
1.0
|
HD3
|
A:ARG106
|
4.0
|
39.1
|
0.6
|
HB2
|
A:ARG106
|
4.0
|
35.3
|
0.6
|
CD
|
A:ARG106
|
4.0
|
32.7
|
0.4
|
HH21
|
A:ARG106
|
4.0
|
40.6
|
0.4
|
CB
|
A:ALA103
|
4.1
|
35.0
|
1.0
|
HB2
|
A:ARG106
|
4.1
|
35.5
|
0.4
|
CD
|
A:ARG106
|
4.1
|
32.6
|
0.6
|
HB3
|
A:ARG106
|
4.1
|
35.5
|
0.4
|
HA
|
B:ALA117
|
4.1
|
48.6
|
1.0
|
C
|
A:ASP102
|
4.1
|
32.8
|
1.0
|
O
|
A:ASP102
|
4.2
|
30.2
|
1.0
|
HB3
|
A:ARG106
|
4.2
|
35.3
|
0.6
|
HB1
|
A:ALA103
|
4.3
|
42.0
|
1.0
|
H
|
A:ALA103
|
4.4
|
40.1
|
1.0
|
CD1
|
B:LEU120
|
4.4
|
45.6
|
1.0
|
NH1
|
A:ARG106
|
4.4
|
35.6
|
0.6
|
HD13
|
B:LEU120
|
4.5
|
54.8
|
1.0
|
CA
|
B:ALA117
|
4.5
|
40.5
|
1.0
|
CB
|
A:ARG106
|
4.5
|
29.6
|
0.4
|
CZ
|
A:ARG106
|
4.5
|
33.2
|
0.4
|
CB
|
A:ARG106
|
4.5
|
29.4
|
0.6
|
HB3
|
B:ALA117
|
4.5
|
48.2
|
1.0
|
NH2
|
A:ARG106
|
4.6
|
33.9
|
0.4
|
HA
|
A:ASP102
|
4.7
|
38.3
|
1.0
|
O
|
B:ALA117
|
4.7
|
44.3
|
1.0
|
HD11
|
B:LEU120
|
4.8
|
54.8
|
1.0
|
HD2
|
A:ARG106
|
4.8
|
39.2
|
0.4
|
HB2
|
B:LEU120
|
4.8
|
61.3
|
1.0
|
HH12
|
A:ARG106
|
4.8
|
42.7
|
0.6
|
CG
|
A:ARG106
|
4.9
|
31.8
|
0.4
|
CG
|
A:ARG106
|
4.9
|
31.7
|
0.6
|
C
|
A:ALA103
|
4.9
|
33.4
|
1.0
|
HB3
|
A:ALA103
|
4.9
|
42.0
|
1.0
|
|
Bromine binding site 9 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 9 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br208
b:72.5
occ:0.70
|
O
|
A:HOH318
|
2.9
|
45.1
|
1.0
|
O
|
A:HOH377
|
3.0
|
52.6
|
1.0
|
HD3
|
A:LYS63
|
3.1
|
48.0
|
1.0
|
HB3
|
A:LYS63
|
3.2
|
45.4
|
1.0
|
HD11
|
A:LEU65
|
3.2
|
38.7
|
1.0
|
HA
|
A:ALA12
|
3.4
|
53.8
|
1.0
|
C
|
A:ASP11
|
3.8
|
77.7
|
1.0
|
O
|
A:ASP11
|
3.8
|
82.2
|
1.0
|
N
|
A:ALA12
|
3.9
|
59.2
|
1.0
|
HD21
|
A:LEU15
|
3.9
|
43.9
|
1.0
|
HD21
|
A:LEU65
|
3.9
|
41.8
|
1.0
|
HB2
|
A:ALA12
|
4.0
|
47.7
|
1.0
|
HG2
|
A:LYS63
|
4.0
|
49.6
|
1.0
|
CA
|
A:ALA12
|
4.0
|
44.8
|
1.0
|
CD
|
A:LYS63
|
4.0
|
40.0
|
1.0
|
CB
|
A:LYS63
|
4.0
|
37.8
|
1.0
|
HZ3
|
A:LYS63
|
4.1
|
54.2
|
1.0
|
CD1
|
A:LEU65
|
4.1
|
32.2
|
1.0
|
HG
|
A:LEU65
|
4.2
|
39.6
|
1.0
|
H
|
A:ALA12
|
4.2
|
71.1
|
1.0
|
CG
|
A:LYS63
|
4.2
|
41.3
|
1.0
|
HA
|
A:ASP11
|
4.3
|
0.6
|
1.0
|
N
|
A:ASP11
|
4.3
|
93.6
|
1.0
|
HD12
|
A:LEU65
|
4.4
|
38.7
|
1.0
|
CA
|
A:ASP11
|
4.4
|
88.8
|
1.0
|
HB2
|
A:LYS63
|
4.5
|
45.4
|
1.0
|
CB
|
A:ALA12
|
4.5
|
39.8
|
1.0
|
CG
|
A:LEU65
|
4.6
|
33.0
|
1.0
|
HD2
|
A:LYS63
|
4.6
|
48.0
|
1.0
|
O
|
A:LYS63
|
4.7
|
39.0
|
1.0
|
CD2
|
A:LEU65
|
4.7
|
34.8
|
1.0
|
CD2
|
A:LEU15
|
4.7
|
36.6
|
1.0
|
NZ
|
A:LYS63
|
4.7
|
45.2
|
1.0
|
HZ1
|
A:LYS63
|
4.8
|
54.2
|
1.0
|
HD23
|
A:LEU15
|
4.8
|
43.9
|
1.0
|
HG
|
A:LEU15
|
4.8
|
40.6
|
1.0
|
HD13
|
A:LEU65
|
4.8
|
38.7
|
1.0
|
HD11
|
A:LEU15
|
4.8
|
38.4
|
1.0
|
CE
|
A:LYS63
|
4.9
|
42.7
|
1.0
|
HB1
|
A:ALA12
|
5.0
|
47.7
|
1.0
|
|
Bromine binding site 10 out
of 24 in 6faq
Go back to
Bromine Binding Sites List in 6faq
Bromine binding site 10 out
of 24 in the Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 10 of Structure of H. Salinarum Rosr (VNG0258) Grown From Kbr within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br209
b:70.3
occ:0.58
|
HA
|
A:TRP94
|
2.9
|
34.4
|
1.0
|
O
|
A:HOH319
|
3.0
|
44.9
|
1.0
|
HD1
|
A:TRP94
|
3.0
|
37.4
|
1.0
|
HB2
|
A:TRP94
|
3.3
|
37.4
|
1.0
|
O
|
A:HOH386
|
3.5
|
42.5
|
1.0
|
CA
|
A:TRP94
|
3.6
|
28.7
|
1.0
|
HH22
|
A:ARG13
|
3.8
|
57.6
|
1.0
|
CB
|
A:TRP94
|
3.8
|
31.2
|
1.0
|
CD1
|
A:TRP94
|
3.8
|
31.2
|
1.0
|
N
|
A:TRP94
|
3.8
|
27.8
|
1.0
|
HB3
|
A:GLU93
|
4.1
|
35.6
|
1.0
|
H
|
A:TRP94
|
4.1
|
33.3
|
1.0
|
HB3
|
A:SER97
|
4.1
|
40.5
|
1.0
|
C
|
A:GLU93
|
4.2
|
26.1
|
1.0
|
CG
|
A:TRP94
|
4.2
|
30.2
|
1.0
|
O
|
A:HOH362
|
4.3
|
38.2
|
1.0
|
OG
|
A:SER97
|
4.3
|
35.2
|
1.0
|
O
|
A:GLU93
|
4.3
|
24.1
|
1.0
|
NH2
|
A:ARG13
|
4.3
|
48.0
|
1.0
|
HG
|
A:SER97
|
4.4
|
42.3
|
1.0
|
HB2
|
A:GLU93
|
4.4
|
35.6
|
1.0
|
HH21
|
A:ARG13
|
4.4
|
57.6
|
1.0
|
O
|
A:HOH373
|
4.5
|
39.5
|
1.0
|
CB
|
A:GLU93
|
4.6
|
29.7
|
1.0
|
HB3
|
A:TRP94
|
4.7
|
37.4
|
1.0
|
CB
|
A:SER97
|
4.7
|
33.7
|
1.0
|
HB2
|
A:SER97
|
4.9
|
40.5
|
1.0
|
O
|
A:ASP90
|
4.9
|
34.5
|
1.0
|
C
|
A:TRP94
|
5.0
|
24.5
|
1.0
|
|
Reference:
N.Kutnowski,
H.Shmuely,
I.Dahan,
F.Shmulevich,
G.Davidov,
A.Shahar,
J.Eichler,
R.Zarivach,
B.Shaanan.
The 3-D Structure of VNG0258H/Rosr - A Haloarchaeal Dna-Binding Protein in Its Ionic Shell. J. Struct. Biol. V. 204 191 2018.
ISSN: ESSN 1095-8657
PubMed: 30110657
DOI: 10.1016/J.JSB.2018.08.008
Page generated: Thu Jul 11 01:53:43 2024
|