Bromine in PDB 6h0z: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067

Protein crystallography data

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067, PDB code: 6h0z was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.19 / 1.34
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.900, 71.900, 151.251, 90.00, 90.00, 90.00
R / Rfree (%) 12.9 / 15.1

Other elements in 6h0z:

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 (pdb code 6h0z). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067, PDB code: 6h0z:

Bromine binding site 1 out of 1 in 6h0z

Go back to Bromine Binding Sites List in 6h0z
Bromine binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br411

b:34.0
occ:0.69
BR A:FHQ411 0.0 34.0 0.7
CAP A:FHQ411 1.9 28.0 0.7
CAQ A:FHQ411 2.9 25.6 0.7
CAO A:FHQ411 2.9 26.4 0.7
O A:TYR63 3.6 18.7 1.0
CB A:TYR63 3.6 15.4 1.0
O A:HOH742 3.7 48.9 0.5
CAL A:FHQ411 4.2 25.0 0.7
CAN A:FHQ411 4.2 26.2 0.7
C A:TYR63 4.3 17.7 1.0
CD1 A:LEU206 4.4 18.4 1.0
CD2 A:LEU206 4.4 20.2 1.0
CB A:LEU206 4.5 14.2 1.0
O A:HOH631 4.6 47.2 1.0
CA A:TYR63 4.6 15.7 1.0
O A:HOH950 4.6 47.1 1.0
CG A:LEU206 4.7 16.6 1.0
CAM A:FHQ411 4.7 24.4 0.7
CG A:TYR63 4.7 15.7 1.0
O A:HOH723 4.8 36.6 1.0
CD1 A:ILE66 4.9 21.6 1.0

Reference:

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 To Be Published.
Page generated: Sat Dec 12 02:33:54 2020

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