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Bromine in PDB 6k5i: Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr

Protein crystallography data

The structure of Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr, PDB code: 6k5i was solved by K.Park, H.H.Lim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.89 / 3.02
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 231.914, 98.826, 170.295, 90.00, 131.88, 90.00
R / Rfree (%) 21 / 26.4

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr (pdb code 6k5i). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr, PDB code: 6k5i:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 6k5i

Go back to Bromine Binding Sites List in 6k5i
Bromine binding site 1 out of 2 in the Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br501

b:0.2
occ:1.00
N A:SER107 3.0 86.8 1.0
CB A:SER107 3.6 85.4 1.0
CG A:PRO110 3.7 75.1 1.0
CD A:PRO110 3.8 76.9 1.0
CA A:SER107 3.8 87.0 1.0
C A:GLY106 3.9 85.9 1.0
CA A:GLY106 3.9 88.7 1.0
N A:GLY108 3.9 94.4 1.0
CZ A:PHE348 4.0 82.1 1.0
CG2 A:ILE448 4.1 82.8 1.0
C A:SER107 4.4 88.6 1.0
O A:GLY105 4.4 92.1 1.0
CE1 A:PHE348 4.5 79.5 1.0
CD1 A:ILE448 4.5 79.1 1.0
CB A:PRO110 4.8 80.8 1.0
OG A:SER107 4.8 83.5 1.0
CE2 A:PHE348 4.8 77.8 1.0
N A:GLY106 4.9 96.2 1.0
O A:GLY106 5.0 85.1 1.0

Bromine binding site 2 out of 2 in 6k5i

Go back to Bromine Binding Sites List in 6k5i
Bromine binding site 2 out of 2 in the Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the E148D/R147A/F317A Mutant Clc-EC1 in the Presence of 20 Mm Nabr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.7
occ:1.00
N B:SER107 3.5 82.0 1.0
CG B:PRO110 3.6 71.2 1.0
CB B:SER107 3.7 76.2 1.0
CZ B:PHE348 3.8 72.2 1.0
CD B:PRO110 3.8 75.3 1.0
CD1 B:ILE448 3.8 75.9 1.0
CG2 B:ILE448 3.9 79.5 1.0
N B:GLY108 4.1 78.3 1.0
CA B:SER107 4.2 72.5 1.0
C B:GLY106 4.4 79.0 1.0
CA B:GLY106 4.5 76.0 1.0
CE1 B:PHE348 4.5 73.0 1.0
CE2 B:PHE348 4.5 69.7 1.0
CB B:PRO110 4.6 73.2 1.0
C B:SER107 4.7 74.9 1.0
O B:GLY105 4.8 82.2 1.0
OG B:SER107 4.8 80.7 1.0
CB B:ILE448 4.8 77.0 1.0
NE2 B:GLN277 4.8 90.2 1.0
CG1 B:ILE448 4.9 75.6 1.0

Reference:

K.Park, B.C.Lee, H.H.Lim. Mutation of External Glutamate Residue Reveals A New Intermediate Transport State and Anion Binding Site in A Clc Cl-/H+Antiporter. Proc.Natl.Acad.Sci.Usa V. 116 17345 2019.
ISSN: ESSN 1091-6490
PubMed: 31409705
DOI: 10.1073/PNAS.1901822116
Page generated: Thu Jul 11 02:13:18 2024

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