Bromine in PDB 6lwy: Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3
Protein crystallography data
The structure of Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3, PDB code: 6lwy
was solved by
K.G.Thakur,
V.Solanki,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.64 /
2.30
|
Space group
|
P 43 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.46,
63.46,
63.46,
90,
90,
90
|
R / Rfree (%)
|
18.7 /
23.3
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3
(pdb code 6lwy). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the
Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3, PDB code: 6lwy:
Jump to Bromine binding site number:
1;
2;
3;
4;
Bromine binding site 1 out
of 4 in 6lwy
Go back to
Bromine Binding Sites List in 6lwy
Bromine binding site 1 out
of 4 in the Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br101
b:36.1
occ:1.00
|
N
|
A:ASP7
|
3.4
|
30.4
|
1.0
|
N
|
A:MET35
|
3.5
|
30.4
|
1.0
|
N
|
A:ASN36
|
3.5
|
35.8
|
1.0
|
O
|
A:ALA8
|
3.6
|
21.6
|
1.0
|
N
|
A:ALA8
|
3.7
|
27.0
|
1.0
|
CB
|
A:CYS34
|
3.7
|
21.0
|
1.0
|
CB
|
A:ASP7
|
3.8
|
39.1
|
1.0
|
CB
|
A:MET35
|
3.8
|
38.7
|
1.0
|
CG
|
A:ASN36
|
3.8
|
41.8
|
1.0
|
CD
|
A:PRO6
|
3.9
|
27.4
|
1.0
|
CB
|
A:CYS5
|
3.9
|
24.4
|
1.0
|
OD1
|
A:ASN36
|
4.0
|
43.0
|
1.0
|
CA
|
A:ASP7
|
4.0
|
33.5
|
1.0
|
CB
|
A:ASN36
|
4.0
|
39.2
|
1.0
|
CA
|
A:MET35
|
4.0
|
35.4
|
1.0
|
N
|
A:PRO6
|
4.1
|
28.6
|
1.0
|
ND2
|
A:ASN36
|
4.1
|
42.5
|
1.0
|
CB
|
A:PRO6
|
4.2
|
32.3
|
1.0
|
C
|
A:MET35
|
4.3
|
35.9
|
1.0
|
C
|
A:CYS34
|
4.3
|
21.5
|
1.0
|
OD2
|
A:ASP7
|
4.3
|
48.3
|
1.0
|
C
|
A:ASP7
|
4.3
|
29.6
|
1.0
|
C
|
A:PRO6
|
4.4
|
33.0
|
1.0
|
CA
|
A:CYS34
|
4.4
|
21.4
|
1.0
|
CG
|
A:PRO6
|
4.4
|
30.9
|
1.0
|
CA
|
A:ASN36
|
4.4
|
37.8
|
1.0
|
CA
|
A:PRO6
|
4.5
|
31.8
|
1.0
|
C
|
A:ALA8
|
4.5
|
21.3
|
1.0
|
C
|
A:CYS5
|
4.6
|
28.7
|
1.0
|
CG
|
A:ASP7
|
4.6
|
46.1
|
1.0
|
SG
|
A:CYS34
|
4.7
|
26.5
|
1.0
|
CG
|
A:MET35
|
4.7
|
40.6
|
1.0
|
CA
|
A:ALA8
|
4.7
|
26.9
|
1.0
|
CA
|
A:CYS5
|
4.8
|
25.8
|
1.0
|
CE
|
A:MET35
|
4.9
|
41.6
|
1.0
|
|
Bromine binding site 2 out
of 4 in 6lwy
Go back to
Bromine Binding Sites List in 6lwy
Bromine binding site 2 out
of 4 in the Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br102
b:51.3
occ:1.00
|
CD2
|
A:HIS14
|
3.4
|
31.0
|
1.0
|
NE2
|
A:HIS14
|
3.6
|
31.3
|
1.0
|
N
|
A:HIS14
|
3.6
|
23.6
|
1.0
|
OG1
|
A:THR13
|
3.7
|
29.9
|
1.0
|
O
|
A:HIS14
|
3.8
|
25.8
|
1.0
|
CG
|
A:HIS14
|
4.0
|
30.1
|
1.0
|
CA
|
A:THR13
|
4.1
|
24.8
|
1.0
|
CE1
|
A:HIS14
|
4.2
|
30.9
|
1.0
|
C
|
A:THR13
|
4.4
|
26.3
|
1.0
|
ND1
|
A:HIS14
|
4.4
|
30.5
|
1.0
|
CB
|
A:THR13
|
4.4
|
26.6
|
1.0
|
CA
|
A:HIS14
|
4.5
|
25.5
|
1.0
|
C
|
A:HIS14
|
4.6
|
25.8
|
1.0
|
CB
|
A:HIS14
|
4.8
|
27.8
|
1.0
|
|
Bromine binding site 3 out
of 4 in 6lwy
Go back to
Bromine Binding Sites List in 6lwy
Bromine binding site 3 out
of 4 in the Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br103
b:25.5
occ:0.50
|
N
|
A:TYR17
|
3.5
|
34.0
|
1.0
|
CD2
|
A:TYR17
|
3.5
|
40.6
|
1.0
|
NH1
|
A:ARG28
|
3.6
|
38.5
|
1.0
|
CB
|
A:TYR17
|
4.0
|
36.9
|
1.0
|
CG
|
A:TYR17
|
4.1
|
37.9
|
1.0
|
CE1
|
A:HIS14
|
4.2
|
30.9
|
1.0
|
CA
|
A:ASP16
|
4.2
|
25.6
|
1.0
|
C
|
A:ASP16
|
4.3
|
33.6
|
1.0
|
CA
|
A:TYR17
|
4.3
|
34.9
|
1.0
|
CE2
|
A:TYR17
|
4.4
|
42.9
|
1.0
|
CD
|
A:ARG28
|
4.6
|
29.5
|
1.0
|
O
|
A:THR15
|
4.7
|
25.9
|
1.0
|
ND1
|
A:HIS14
|
4.7
|
30.5
|
1.0
|
OD1
|
A:ASP16
|
4.8
|
27.8
|
1.0
|
CZ
|
A:ARG28
|
4.8
|
37.6
|
1.0
|
CB
|
A:ASP16
|
4.9
|
27.7
|
1.0
|
|
Bromine binding site 4 out
of 4 in 6lwy
Go back to
Bromine Binding Sites List in 6lwy
Bromine binding site 4 out
of 4 in the Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br104
b:80.9
occ:1.00
|
N
|
A:ALA2
|
3.4
|
25.8
|
1.0
|
CD
|
A:ARG43
|
3.6
|
39.7
|
1.0
|
CB
|
A:ARG43
|
3.8
|
33.1
|
1.0
|
O
|
A:CYS42
|
4.2
|
33.7
|
1.0
|
CG
|
A:ARG43
|
4.3
|
34.6
|
1.0
|
NH1
|
A:ARG43
|
4.4
|
56.6
|
1.0
|
C
|
A:CYS42
|
4.6
|
31.5
|
1.0
|
CA
|
A:ALA2
|
4.7
|
25.6
|
1.0
|
NE
|
A:ARG43
|
4.8
|
46.5
|
1.0
|
CB
|
A:CYS42
|
4.8
|
30.2
|
1.0
|
N
|
A:ARG43
|
4.9
|
30.3
|
1.0
|
CA
|
A:ARG43
|
4.9
|
30.0
|
1.0
|
|
Reference:
K.G.Thakur,
V.Solanki.
Crystal Structure of LATEROSPORULIN3, Bacteriocin Produced By Brevibacillus Sp. Strain SKR3 To Be Published.
Page generated: Thu Jul 11 02:16:18 2024
|