Bromine in PDB 6m9g: Bbvci B2 Dimer with TA6BR14 Clusters

The structure of Bbvci B2 Dimer with TA6BR14 Clusters, PDB code: 6m9g was solved by B.W.Shen, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.97 / 2.35
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	86.106, 173.304, 107.054, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 23.9

The structure of Bbvci B2 Dimer with TA6BR14 Clusters also contains other interesting chemical elements:

Tantalum

(Ta)

66 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 132;

Binding sites:

The binding sites of Bromine atom in the Bbvci B2 Dimer with TA6BR14 Clusters (pdb code 6m9g). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 132 binding sites of Bromine where determined in the Bbvci B2 Dimer with TA6BR14 Clusters, PDB code: 6m9g:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:84.5 occ:0.50 BR1 A:TBR301 0.0 84.5 0.5 TA1 A:TBR301 1.8 29.2 0.5 BR4 A:TBR301 2.5 28.7 0.5 TA2 A:TBR301 2.6 82.1 0.5 TA1 A:TBR301 2.6 75.4 0.5 BR3 A:TBR301 2.8 32.0 0.5 BR1 A:TBR301 2.9 35.6 0.5 BR2 A:TBR301 3.1 29.7 0.5 BR5 A:TBR301 3.4 85.3 0.5 BR2 A:TBR301 3.5 85.8 0.5 BRC A:TBR301 3.5 79.8 0.5 BR4 A:TBR301 3.7 0.5 0.5 TA3 A:TBR301 4.1 72.1 0.5 TA6 A:TBR301 4.1 34.3 0.5 TA6 A:TBR301 4.2 77.0 0.5 TA5 A:TBR301 4.3 27.2 0.5 TA2 A:TBR301 4.3 26.3 0.5 TA3 A:TBR301 4.5 34.4 0.5 BRC A:TBR301 5.0 25.7 0.5

Bromine binding site 2 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:35.6 occ:0.50 BR1 A:TBR301 0.0 35.6 0.5 TA2 A:TBR301 1.6 82.1 0.5 BR5 A:TBR301 1.9 85.3 0.5 TA1 A:TBR301 2.6 29.2 0.5 TA2 A:TBR301 2.6 26.3 0.5 BR9 A:TBR301 2.7 64.3 0.5 BR1 A:TBR301 2.9 84.5 0.5 BRC A:TBR301 3.5 79.8 0.5 BRC A:TBR301 3.5 25.7 0.5 BR4 A:TBR301 3.6 28.7 0.5 TA3 A:TBR301 3.6 72.1 0.5 BR2 A:TBR301 3.7 29.7 0.5 BR5 A:TBR301 3.7 28.4 0.5 TA4 A:TBR301 4.0 87.9 0.5 TA1 A:TBR301 4.1 75.4 0.5 TA6 A:TBR301 4.2 34.3 0.5 TA3 A:TBR301 4.3 34.4 0.5 TA6 A:TBR301 4.5 77.0 0.5 BRA A:TBR301 4.5 0.8 0.5 BR2 A:TBR301 4.6 85.8 0.5 ND2 A:ASN109 4.7 61.1 1.0 CE2 A:PHE5 4.8 60.8 1.0

Bromine binding site 3 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:85.8 occ:0.50 BR2 A:TBR301 0.0 85.8 0.5 BR2 A:TBR301 1.4 29.7 0.5 TA3 A:TBR301 2.4 34.4 0.5 BR6 A:TBR301 2.4 28.5 0.5 TA3 A:TBR301 2.6 72.1 0.5 TA1 A:TBR301 2.6 75.4 0.5 TA1 A:TBR301 2.8 29.2 0.5 BR3 A:TBR301 2.9 32.0 0.5 TA5 A:TBR301 3.3 27.2 0.5 BR5 A:TBR301 3.5 85.3 0.5 BR1 A:TBR301 3.5 84.5 0.5 BR6 A:TBR301 3.5 89.6 0.5 BR3 A:TBR301 3.7 68.6 0.5 TA2 A:TBR301 4.1 82.1 0.5 TA5 A:TBR301 4.2 84.4 0.5 BR5 A:TBR301 4.3 28.4 0.5 CB A:ASP103 4.4 47.5 1.0 TA2 A:TBR301 4.6 26.3 0.5 BR1 A:TBR301 4.6 35.6 0.5 BRA A:TBR301 4.8 28.2 0.5 OD2 A:ASP103 4.8 46.5 1.0 N A:SER104 4.9 57.1 1.0 CG A:ASP103 4.9 48.2 1.0 TA4 A:TBR301 5.0 28.0 0.5

Bromine binding site 4 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:29.7 occ:0.50 BR2 A:TBR301 0.0 29.7 0.5 BR2 A:TBR301 1.4 85.8 0.5 BR5 A:TBR301 2.3 85.3 0.5 TA3 A:TBR301 2.6 72.1 0.5 TA1 A:TBR301 2.6 29.2 0.5 TA3 A:TBR301 2.8 34.4 0.5 BR1 A:TBR301 3.1 84.5 0.5 TA1 A:TBR301 3.2 75.4 0.5 CB A:ASP103 3.6 47.5 1.0 TA2 A:TBR301 3.6 82.1 0.5 BR5 A:TBR301 3.7 28.4 0.5 BR1 A:TBR301 3.7 35.6 0.5 BR3 A:TBR301 3.7 32.0 0.5 BR6 A:TBR301 3.8 28.5 0.5 TA2 A:TBR301 4.2 26.3 0.5 CG A:ASP103 4.2 48.2 1.0 TA5 A:TBR301 4.3 27.2 0.5 BR6 A:TBR301 4.4 89.6 0.5 OD2 A:ASP103 4.4 46.5 1.0 ND2 A:ASN109 4.6 61.1 1.0 CA A:ASP103 4.7 51.4 1.0 BRA A:TBR301 4.8 0.8 0.5 N A:SER104 4.8 57.1 1.0 TA5 A:TBR301 5.0 84.4 0.5 BR3 A:TBR301 5.0 68.6 0.5

Bromine binding site 5 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:68.6 occ:0.50 BR3 A:TBR301 0.0 68.6 0.5 TA5 A:TBR301 1.5 27.2 0.5 BR6 A:TBR301 2.4 28.5 0.5 TA5 A:TBR301 2.6 84.4 0.5 TA1 A:TBR301 2.6 75.4 0.5 BR3 A:TBR301 2.8 32.0 0.5 BR7 A:TBR301 2.8 28.0 0.5 BRB A:TBR301 3.0 25.8 0.5 BR4 A:TBR301 3.4 0.5 0.5 NH2 A:ARG101 3.6 58.0 1.0 BR6 A:TBR301 3.7 89.6 0.5 BR2 A:TBR301 3.7 85.8 0.5 BRB A:TBR301 3.8 90.8 0.5 TA3 A:TBR301 3.9 34.4 0.5 TA6 A:TBR301 4.0 77.0 0.5 TA1 A:TBR301 4.1 29.2 0.5 TA4 A:TBR301 4.1 28.0 0.5 CZ A:ARG101 4.2 58.3 1.0 TA6 A:TBR301 4.2 34.3 0.5 TA3 A:TBR301 4.2 72.1 0.5 NE A:ARG101 4.6 57.1 1.0 NH1 A:ARG101 4.9 55.9 1.0 BRA A:TBR301 4.9 28.2 0.5 BR2 A:TBR301 5.0 29.7 0.5

Bromine binding site 6 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:32.0 occ:0.50 BR3 A:TBR301 0.0 32.0 0.5 TA1 A:TBR301 1.6 75.4 0.5 BR4 A:TBR301 2.6 0.5 0.5 TA1 A:TBR301 2.7 29.2 0.5 TA5 A:TBR301 2.7 27.2 0.5 BR1 A:TBR301 2.8 84.5 0.5 BR3 A:TBR301 2.8 68.6 0.5 BR2 A:TBR301 2.9 85.8 0.5 BR6 A:TBR301 3.6 28.5 0.5 BR4 A:TBR301 3.6 28.7 0.5 BR2 A:TBR301 3.7 29.7 0.5 BRB A:TBR301 3.7 25.8 0.5 TA6 A:TBR301 4.1 77.0 0.5 TA2 A:TBR301 4.2 82.1 0.5 TA5 A:TBR301 4.2 84.4 0.5 TA3 A:TBR301 4.2 34.4 0.5 TA6 A:TBR301 4.2 34.3 0.5 TA3 A:TBR301 4.3 72.1 0.5 BRC A:TBR301 4.9 79.8 0.5

Bromine binding site 7 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:0.5 occ:0.50 BR4 A:TBR301 0.0 0.5 0.5 BRB A:TBR301 1.8 25.8 0.5 BR4 A:TBR301 2.5 28.7 0.5 TA6 A:TBR301 2.6 77.0 0.5 TA1 A:TBR301 2.6 75.4 0.5 BR3 A:TBR301 2.6 32.0 0.5 TA6 A:TBR301 3.0 34.3 0.5 TA5 A:TBR301 3.0 27.2 0.5 BR3 A:TBR301 3.4 68.6 0.5 TA1 A:TBR301 3.5 29.2 0.5 BRC A:TBR301 3.5 79.8 0.5 BR1 A:TBR301 3.7 84.5 0.5 BRB A:TBR301 3.9 90.8 0.5 TA5 A:TBR301 4.1 84.4 0.5 TA2 A:TBR301 4.2 82.1 0.5

Bromine binding site 8 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:28.7 occ:0.50 BR4 A:TBR301 0.0 28.7 0.5 BRC A:TBR301 1.4 79.8 0.5 BR1 A:TBR301 2.5 84.5 0.5 BR4 A:TBR301 2.5 0.5 0.5 TA2 A:TBR301 2.6 82.1 0.5 TA6 A:TBR301 2.6 77.0 0.5 TA6 A:TBR301 2.6 34.3 0.5 TA1 A:TBR301 2.6 29.2 0.5 TA1 A:TBR301 3.1 75.4 0.5 BRC A:TBR301 3.5 25.7 0.5 BR1 A:TBR301 3.6 35.6 0.5 BR3 A:TBR301 3.6 32.0 0.5 BRB A:TBR301 3.7 25.8 0.5 TA2 A:TBR301 4.1 26.3 0.5 TA5 A:TBR301 4.1 27.2 0.5 BR8 A:TBR301 4.4 97.2 0.5 TA4 A:TBR301 4.6 87.9 0.5 BR9 A:TBR301 4.7 64.3 0.5 BR5 A:TBR301 4.8 85.3 0.5 TA3 A:TBR301 4.9 72.1 0.5 TA5 A:TBR301 4.9 84.4 0.5

Bromine binding site 9 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:85.3 occ:0.50 BR5 A:TBR301 0.0 85.3 0.5 BR1 A:TBR301 1.9 35.6 0.5 BR2 A:TBR301 2.3 29.7 0.5 BR5 A:TBR301 2.4 28.4 0.5 TA2 A:TBR301 2.6 82.1 0.5 TA3 A:TBR301 2.6 72.1 0.5 TA1 A:TBR301 2.7 29.2 0.5 TA2 A:TBR301 2.8 26.3 0.5 TA3 A:TBR301 3.2 34.4 0.5 BR1 A:TBR301 3.4 84.5 0.5 BR9 A:TBR301 3.4 64.3 0.5 BR2 A:TBR301 3.5 85.8 0.5 BRA A:TBR301 3.7 0.8 0.5 ND2 A:ASN109 3.8 61.1 1.0 TA1 A:TBR301 4.0 75.4 0.5 CE2 A:PHE5 4.1 60.8 1.0 TA4 A:TBR301 4.2 87.9 0.5 CB A:ASP103 4.5 47.5 1.0 CG A:ASP103 4.6 48.2 1.0 CZ A:PHE5 4.6 60.8 1.0 BRC A:TBR301 4.8 25.7 0.5 BR4 A:TBR301 4.8 28.7 0.5 OD2 A:ASP103 4.9 46.5 1.0 CG A:ASN109 4.9 59.9 1.0 OD1 A:ASP103 4.9 48.9 1.0 TA6 A:TBR301 4.9 34.3 0.5

Bromine binding site 10 out of 132 in the Bbvci B2 Dimer with TA6BR14 Clusters


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Bbvci B2 Dimer with TA6BR14 Clusters within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:28.4 occ:0.50 BR5 A:TBR301 0.0 28.4 0.5 BRA A:TBR301 1.6 0.8 0.5 TA3 A:TBR301 2.3 72.1 0.5 BR5 A:TBR301 2.4 85.3 0.5 TA2 A:TBR301 2.6 26.3 0.5 TA3 A:TBR301 2.7 34.4 0.5 BR9 A:TBR301 3.3 64.3 0.5 TA4 A:TBR301 3.5 87.9 0.5 CE2 A:PHE5 3.6 60.8 1.0 BRA A:TBR301 3.6 28.2 0.5 BR9 A:TBR301 3.6 27.2 0.5 BR2 A:TBR301 3.7 29.7 0.5 BR1 A:TBR301 3.7 35.6 0.5 CZ A:PHE5 3.7 60.8 1.0 TA2 A:TBR301 3.8 82.1 0.5 CG A:PRO7 3.8 42.8 1.0 BR6 A:TBR301 4.0 89.6 0.5 OD2 A:ASP103 4.1 46.5 1.0 TA1 A:TBR301 4.1 29.2 0.5 TA4 A:TBR301 4.2 28.0 0.5 CD A:PRO7 4.2 40.9 1.0 BR2 A:TBR301 4.3 85.8 0.5 CG A:ASP103 4.3 48.2 1.0 CB A:PRO7 4.6 40.5 1.0 OD1 A:ASP103 4.6 48.9 1.0 O A:SER100 4.8 43.9 1.0 TA5 A:TBR301 4.8 84.4 0.5 CD2 A:PHE5 4.8 66.6 1.0 NH2 A:ARG113 4.9 43.3 1.0 BR7 A:TBR301 5.0 87.6 0.5 CB A:ASP103 5.0 47.5 1.0 TA1 A:TBR301 5.0 75.4 0.5

B.W.Shen, L.Doyle, P.Bradley, D.F.Heiter, K.D.Lunnen, G.G.Wilson, B.L.Stoddard. Structure, Subunit Organization and Behavior of the Asymmetric Type Iit Restriction Endonuclease Bbvci. Nucleic Acids Res. V. 47 450 2019.
ISSN: ESSN 1362-4962
PubMed: 30395313
DOI: 10.1093/NAR/GKY1059