Bromine in PDB 6mn8: Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide

Protein crystallography data

The structure of Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide, PDB code: 6mn8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.28 / 2.35
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 159.720, 159.720, 143.720, 90.00, 90.00, 120.00
R / Rfree (%) 14.2 / 18

Other elements in 6mn8:

The structure of Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide (pdb code 6mn8). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide, PDB code: 6mn8:

Bromine binding site 1 out of 1 in 6mn8

Go back to Bromine Binding Sites List in 6mn8
Bromine binding site 1 out of 1 in the Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br603

b:70.7
occ:1.00
BR1 A:HFG603 0.0 70.7 1.0
C7 A:HFG603 1.9 43.8 1.0
C8 A:HFG603 2.8 31.0 1.0
C6 A:HFG603 2.9 31.6 1.0
CL1 A:HFG603 3.3 39.5 1.0
O A:PHE135 3.3 90.7 1.0
CB A:GLU138 3.5 47.5 1.0
CB A:PRO158 3.6 23.0 1.0
CG2 A:VAL139 3.6 45.4 1.0
O A:GLU138 3.8 40.9 1.0
CG A:PRO158 3.8 20.9 1.0
C A:GLU138 3.9 36.8 1.0
C A:PHE135 4.1 0.0 1.0
C9 A:HFG603 4.1 28.8 1.0
C5 A:HFG603 4.2 29.1 1.0
CA A:GLU138 4.2 51.5 1.0
OE1 A:GLU138 4.2 45.0 1.0
CB A:PHE135 4.3 93.1 1.0
N A:VAL139 4.4 32.7 1.0
CA A:PHE135 4.6 0.3 1.0
N A:GLU138 4.6 60.1 1.0
C10 A:HFG603 4.6 32.7 1.0
CG A:GLU138 4.7 63.7 1.0
CA A:VAL139 4.7 34.2 1.0
CG A:PHE135 4.8 85.4 1.0
CB A:VAL139 4.8 41.2 1.0
CD A:GLU138 4.9 64.8 1.0
CG A:ARG190 4.9 24.3 1.0
CD1 A:PHE135 4.9 83.4 1.0

Reference:

D.M.Dranow, D.G.Conrady, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Onchocerca Volvulus with Bound Halofuginone and Nucleotide To Be Published.
Page generated: Sat Dec 12 02:35:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy