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Bromine in PDB 6oga: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51)

Protein crystallography data

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51), PDB code: 6oga was solved by C.-Y.Lin, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.30 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.600, 68.600, 61.450, 90.00, 99.82, 90.00
R / Rfree (%) 16.1 / 18.6

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51) (pdb code 6oga). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51), PDB code: 6oga:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 6oga

Go back to Bromine Binding Sites List in 6oga
Bromine binding site 1 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br15

b:23.9
occ:1.00
BR A:B2C15 0.0 23.9 1.0
CE1 A:B2C15 1.9 18.5 1.0
CD1 A:B2C15 2.8 18.6 1.0
CZ A:B2C15 2.9 19.6 1.0
OG1 A:THR155 2.9 21.1 1.0
OH A:B2C15 3.1 21.3 1.0
CD A:GLU172 3.5 25.8 1.0
OE1 A:GLU172 3.7 25.4 1.0
CE2 A:PHE95 3.7 23.7 1.0
O A:HOH444 3.7 15.8 1.0
OE2 A:GLU172 3.8 28.1 1.0
CG A:GLU172 3.8 30.2 1.0
CB A:THR153 3.8 20.0 1.0
OG1 A:THR153 3.9 16.1 1.0
CD2 A:PHE95 4.0 22.0 1.0
CG1 A:VAL11 4.2 18.5 1.0
CG2 A:B2C15 4.2 17.5 1.0
CB A:THR155 4.2 16.5 1.0
CE2 A:B2C15 4.2 19.8 1.0
CG2 A:THR153 4.4 18.9 1.0
CG2 A:THR155 4.6 18.9 1.0
CZ A:PHE95 4.7 18.4 1.0
CD2 A:B2C15 4.7 18.7 1.0
OG1 A:B2C15 4.8 20.2 1.0
CB A:GLU172 5.0 23.4 1.0

Bromine binding site 2 out of 2 in 6oga

Go back to Bromine Binding Sites List in 6oga
Bromine binding site 2 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br15

b:25.7
occ:1.00
BR B:B2C15 0.0 25.7 1.0
CE1 B:B2C15 1.9 18.2 1.0
CD1 B:B2C15 2.8 21.9 1.0
CZ B:B2C15 2.9 20.3 1.0
OG1 B:THR155 2.9 22.8 1.0
OH B:B2C15 3.0 22.5 1.0
CD B:GLU172 3.5 28.3 1.0
OE1 B:GLU172 3.7 29.1 1.0
CE2 B:PHE95 3.7 20.8 1.0
O B:HOH450 3.7 19.2 1.0
OE2 B:GLU172 3.7 30.1 1.0
CB B:THR153 3.8 21.7 1.0
OG1 B:THR153 3.8 21.3 1.0
CG B:GLU172 3.9 32.3 1.0
CD2 B:PHE95 4.0 21.4 1.0
CB B:THR155 4.2 21.6 1.0
CG2 B:B2C15 4.2 22.9 1.0
CE2 B:B2C15 4.2 18.1 1.0
CG1 B:VAL11 4.3 17.8 1.0
CG2 B:THR153 4.3 22.3 1.0
CG2 B:THR155 4.6 21.2 1.0
CZ B:PHE95 4.6 22.3 1.0
CD2 B:B2C15 4.7 18.9 1.0
O B:HOH406 4.9 39.7 1.0
OG1 B:B2C15 4.9 22.9 1.0

Reference:

C.-Y.Lin, A.Deng, S.G.Boxer. Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3-BR1Y), H148D; Circular Permutant (50-51) To Be Published.
Page generated: Thu Jul 11 02:20:51 2024

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