Bromine in PDB 6otl: Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Protein crystallography data
The structure of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde, PDB code: 6otl
was solved by
D.N.Jones,
E.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
2.59
|
Space group
|
P 31 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.760,
87.760,
59.630,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.4 /
20.9
|
Other elements in 6otl:
The structure of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde also contains other interesting chemical elements:
Bromine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Bromine atom in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
(pdb code 6otl). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the
Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde, PDB code: 6otl:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Bromine binding site 1 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 1 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:65.8
occ:0.64
|
BR1
|
A:TBR201
|
0.0
|
65.8
|
0.6
|
TA2
|
A:TBR201
|
2.6
|
68.3
|
0.8
|
TA1
|
A:TBR201
|
2.6
|
68.3
|
0.7
|
BR5
|
A:TBR201
|
3.6
|
70.5
|
0.7
|
BR2
|
A:TBR201
|
3.6
|
67.5
|
0.7
|
BR4
|
A:TBR201
|
3.8
|
64.7
|
0.6
|
BRC
|
A:TBR201
|
3.8
|
61.9
|
0.6
|
CG1
|
A:VAL89
|
4.2
|
39.8
|
1.0
|
TA3
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
TA6
|
A:TBR201
|
4.2
|
76.9
|
0.8
|
CD2
|
A:LEU86
|
4.8
|
47.4
|
1.0
|
CB
|
A:VAL89
|
4.9
|
43.4
|
1.0
|
|
Bromine binding site 2 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 2 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:67.5
occ:0.68
|
BR2
|
A:TBR201
|
0.0
|
67.5
|
0.7
|
TA1
|
A:TBR201
|
2.6
|
68.3
|
0.7
|
TA3
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
BR5
|
A:TBR201
|
3.6
|
70.5
|
0.7
|
BR1
|
A:TBR201
|
3.6
|
65.8
|
0.6
|
BR3
|
A:TBR201
|
3.7
|
69.3
|
0.6
|
BR6
|
A:TBR201
|
3.7
|
69.6
|
0.5
|
CA
|
A:ASP90
|
3.7
|
42.3
|
1.0
|
N
|
A:ASP90
|
4.0
|
45.0
|
1.0
|
CG1
|
A:VAL89
|
4.0
|
39.8
|
1.0
|
C
|
A:ASP90
|
4.0
|
40.8
|
1.0
|
O
|
A:VAL89
|
4.0
|
49.2
|
1.0
|
C
|
A:VAL89
|
4.1
|
43.5
|
1.0
|
TA2
|
A:TBR201
|
4.2
|
68.3
|
0.8
|
TA5
|
A:TBR201
|
4.2
|
78.2
|
0.8
|
N
|
A:LYS91
|
4.3
|
41.0
|
1.0
|
O
|
A:ASP90
|
4.5
|
40.2
|
1.0
|
CB
|
A:VAL89
|
4.8
|
43.4
|
1.0
|
|
Bromine binding site 3 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 3 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:69.3
occ:0.56
|
BR3
|
A:TBR201
|
0.0
|
69.3
|
0.6
|
TA1
|
A:TBR201
|
2.6
|
68.3
|
0.7
|
TA5
|
A:TBR201
|
2.6
|
78.2
|
0.8
|
BRB
|
A:TBR201
|
3.5
|
73.1
|
0.6
|
BR4
|
A:TBR201
|
3.5
|
64.7
|
0.6
|
BR2
|
A:TBR201
|
3.7
|
67.5
|
0.7
|
BR6
|
A:TBR201
|
3.7
|
69.6
|
0.5
|
TA6
|
A:TBR201
|
4.1
|
76.9
|
0.8
|
TA3
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
CB
|
A:LYS91
|
4.6
|
43.3
|
1.0
|
|
Bromine binding site 4 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 4 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:64.7
occ:0.62
|
BR4
|
A:TBR201
|
0.0
|
64.7
|
0.6
|
TA6
|
A:TBR201
|
2.6
|
76.9
|
0.8
|
TA1
|
A:TBR201
|
2.6
|
68.3
|
0.7
|
BRB
|
A:TBR201
|
3.5
|
73.1
|
0.6
|
BR3
|
A:TBR201
|
3.5
|
69.3
|
0.6
|
BR1
|
A:TBR201
|
3.8
|
65.8
|
0.6
|
BRC
|
A:TBR201
|
3.9
|
61.9
|
0.6
|
TA5
|
A:TBR201
|
4.1
|
78.2
|
0.8
|
TA2
|
A:TBR201
|
4.2
|
68.3
|
0.8
|
|
Bromine binding site 5 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 5 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:70.5
occ:0.65
|
BR5
|
A:TBR201
|
0.0
|
70.5
|
0.7
|
TA3
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
TA2
|
A:TBR201
|
2.6
|
68.3
|
0.8
|
BR9
|
A:TBR201
|
3.5
|
70.3
|
0.6
|
BR2
|
A:TBR201
|
3.6
|
67.5
|
0.7
|
BR1
|
A:TBR201
|
3.6
|
65.8
|
0.6
|
BRA
|
A:TBR201
|
3.6
|
73.9
|
0.6
|
TA1
|
A:TBR201
|
4.2
|
68.3
|
0.7
|
TA4
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
O
|
A:VAL89
|
5.0
|
49.2
|
1.0
|
|
Bromine binding site 6 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 6 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:69.6
occ:0.53
|
BR6
|
A:TBR201
|
0.0
|
69.6
|
0.5
|
TA5
|
A:TBR201
|
2.6
|
78.2
|
0.8
|
TA3
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
BRA
|
A:TBR201
|
3.7
|
73.9
|
0.6
|
BR7
|
A:TBR201
|
3.7
|
74.3
|
0.5
|
BR2
|
A:TBR201
|
3.7
|
67.5
|
0.7
|
BR3
|
A:TBR201
|
3.7
|
69.3
|
0.6
|
TA4
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
TA1
|
A:TBR201
|
4.2
|
68.3
|
0.7
|
O
|
A:HOH304
|
4.3
|
45.5
|
1.0
|
CB
|
A:LYS91
|
5.0
|
43.3
|
1.0
|
|
Bromine binding site 7 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 7 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:74.3
occ:0.49
|
BR7
|
A:TBR201
|
0.0
|
74.3
|
0.5
|
TA5
|
A:TBR201
|
2.6
|
78.2
|
0.8
|
TA4
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
BR8
|
A:TBR201
|
3.6
|
72.4
|
0.5
|
BRB
|
A:TBR201
|
3.6
|
73.1
|
0.6
|
BR6
|
A:TBR201
|
3.7
|
69.6
|
0.5
|
BRA
|
A:TBR201
|
3.8
|
73.9
|
0.6
|
TA6
|
A:TBR201
|
4.1
|
76.9
|
0.8
|
TA3
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
|
Bromine binding site 8 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 8 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:72.4
occ:0.53
|
BR8
|
A:TBR201
|
0.0
|
72.4
|
0.5
|
TA4
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
TA6
|
A:TBR201
|
2.6
|
76.9
|
0.8
|
BRC
|
A:TBR201
|
3.5
|
61.9
|
0.6
|
BR7
|
A:TBR201
|
3.6
|
74.3
|
0.5
|
BR9
|
A:TBR201
|
3.7
|
70.3
|
0.6
|
BRB
|
A:TBR201
|
3.8
|
73.1
|
0.6
|
TA2
|
A:TBR201
|
4.2
|
68.3
|
0.8
|
TA5
|
A:TBR201
|
4.2
|
78.2
|
0.8
|
|
Bromine binding site 9 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 9 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:70.3
occ:0.61
|
BR9
|
A:TBR201
|
0.0
|
70.3
|
0.6
|
TA4
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
TA2
|
A:TBR201
|
2.6
|
68.3
|
0.8
|
BRA
|
A:TBR201
|
3.5
|
73.9
|
0.6
|
BR5
|
A:TBR201
|
3.5
|
70.5
|
0.7
|
BRC
|
A:TBR201
|
3.6
|
61.9
|
0.6
|
BR8
|
A:TBR201
|
3.7
|
72.4
|
0.5
|
TA3
|
A:TBR201
|
4.1
|
78.7
|
0.8
|
TA6
|
A:TBR201
|
4.3
|
76.9
|
0.8
|
|
Bromine binding site 10 out
of 12 in 6otl
Go back to
Bromine Binding Sites List in 6otl
Bromine binding site 10 out
of 12 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 10 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:73.9
occ:0.60
|
BRA
|
A:TBR201
|
0.0
|
73.9
|
0.6
|
TA4
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
TA3
|
A:TBR201
|
2.6
|
78.7
|
0.8
|
BR9
|
A:TBR201
|
3.5
|
70.3
|
0.6
|
BR5
|
A:TBR201
|
3.6
|
70.5
|
0.7
|
BR6
|
A:TBR201
|
3.7
|
69.6
|
0.5
|
BR7
|
A:TBR201
|
3.8
|
74.3
|
0.5
|
TA2
|
A:TBR201
|
4.2
|
68.3
|
0.8
|
TA5
|
A:TBR201
|
4.2
|
78.2
|
0.8
|
|
Reference:
D.N.Jones,
E.Murphy.
Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde To Be Published.
Page generated: Thu Jul 11 02:22:03 2024
|