Bromine in PDB 6qgl: Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6

The structure of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6, PDB code: 6qgl was solved by K.El Omari, T.S.Walter, K.Harlos, J.M.Grimes, D.I.Stuart, E.Roine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	82.35 / 2.69
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	114.300, 114.300, 445.220, 90.00, 90.00, 120.00
R / Rfree (%)	21.8 / 23.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 (pdb code 6qgl). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 25 binding sites of Bromine where determined in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6, PDB code: 6qgl:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br601 b:62.6 occ:1.00 ND2 A:ASN61 3.3 59.0 1.0 N A:MET227 3.4 51.4 1.0 NE1 A:TRP232 3.5 54.4 1.0 CB A:ASN61 3.9 54.9 1.0 CB A:TYR226 3.9 53.4 1.0 CG A:ASN61 4.1 66.9 1.0 CA A:MET227 4.1 50.4 1.0 CD2 A:TYR226 4.2 54.0 1.0 CE2 A:TRP232 4.3 55.4 1.0 CA A:LYS58 4.3 55.6 1.0 CG A:LYS58 4.3 65.6 1.0 CZ2 A:TRP232 4.3 54.6 1.0 CA A:TYR226 4.4 52.8 1.0 C A:TYR226 4.4 55.7 1.0 CG A:TYR226 4.5 54.1 1.0 CD1 A:TRP232 4.6 55.1 1.0 CG2 A:VAL66 4.7 68.7 1.0 CB A:LYS58 4.7 58.2 1.0 CG2 A:THR126 4.7 52.7 1.0 O A:LYS58 4.9 61.3 1.0 N A:LYS228 5.0 51.7 1.0

Bromine binding site 2 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br602 b:84.3 occ:1.00 OG1 A:THR217 2.9 73.3 1.0 N A:SER230 3.4 53.4 1.0 OG A:SER230 3.5 66.5 1.0 N A:PHE229 3.6 52.4 1.0 CB A:SER230 3.7 58.7 1.0 CD1 A:TYR218 3.8 68.5 1.0 CB A:LYS228 4.1 55.5 1.0 CA A:LYS228 4.1 52.1 1.0 C A:LYS228 4.1 55.6 1.0 CA A:SER230 4.2 54.0 1.0 CG A:LYS228 4.3 63.5 1.0 CB A:THR217 4.3 71.2 1.0 CA A:PHE229 4.3 51.9 1.0 C A:PHE229 4.4 55.8 1.0 CB A:PHE229 4.4 54.4 1.0 CE1 A:TYR218 4.5 70.9 1.0 N A:TYR218 4.5 62.6 1.0 O A:HOH806 4.6 62.4 1.0 CG A:TYR218 4.7 65.7 1.0 CB A:TYR218 4.7 62.7 1.0 O A:HOH787 4.9 65.4 1.0 CG2 A:THR217 5.0 69.0 1.0

Bromine binding site 3 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br603 b:76.9 occ:1.00 NH1 A:ARG47 3.6 57.4 1.0 N A:GLY144 3.6 59.6 1.0 CB A:TYR147 3.9 57.6 1.0 CD A:ARG47 4.0 66.4 1.0 CG1 A:VAL143 4.0 62.9 1.0 CA A:GLY144 4.4 59.2 1.0 CA A:VAL143 4.4 60.1 1.0 CG A:TYR147 4.4 59.6 1.0 CD1 A:TYR147 4.4 62.6 1.0 CZ A:ARG47 4.4 77.7 1.0 O A:GLY144 4.5 61.0 1.0 C A:VAL143 4.5 63.5 1.0 NE A:ARG47 4.6 69.7 1.0 CB A:VAL143 4.8 63.3 1.0 CG A:ARG47 4.8 61.9 1.0 C A:GLY144 4.9 61.8 1.0 CA A:TYR147 5.0 56.6 1.0

Bromine binding site 4 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br604 b:0.2 occ:1.00 CG2 A:THR42 3.5 87.0 1.0 N A:THR42 3.6 76.6 1.0 CG2 A:VAL45 4.0 72.3 1.0 CB A:VAL45 4.0 70.7 1.0 CA A:LEU41 4.0 82.2 1.0 CG1 A:VAL45 4.1 70.1 1.0 CB A:THR42 4.1 87.1 1.0 CD2 A:LEU41 4.1 89.8 1.0 C A:LEU41 4.2 82.0 1.0 CA A:THR42 4.5 75.4 1.0 O A:GLY40 4.5 92.9 1.0 CB A:LEU41 4.7 81.0 1.0

Bromine binding site 5 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br605 b:0.7 occ:1.00 OG A:SER468 3.5 97.3 1.0 CB A:PRO300 3.7 79.8 1.0 CB A:SER327 3.8 95.5 1.0 CG A:PRO300 3.8 83.6 1.0 O A:PHE466 3.8 0.3 1.0 OG A:SER327 3.9 0.9 1.0 N A:SER468 4.0 89.7 1.0 C A:PHE466 4.1 0.3 1.0 CB A:SER468 4.1 89.2 1.0 C A:THR467 4.1 94.7 1.0 CA A:THR467 4.2 94.6 1.0 N A:THR467 4.3 95.3 1.0 CB A:PHE466 4.5 99.5 1.0 CA A:PRO300 4.6 77.3 1.0 CA A:SER468 4.7 87.3 1.0 O A:THR467 4.8 92.8 1.0 CA A:PHE466 4.9 99.0 1.0

Bromine binding site 6 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br606 b:96.6 occ:1.00 ND2 A:ASN124 3.3 55.1 1.0 NH1 A:ARG128 3.5 73.1 1.0 NH2 A:ARG128 3.6 68.9 1.0 CG A:LYS121 3.7 57.0 1.0 CB A:ASN124 3.8 49.9 1.0 CZ A:ARG128 4.0 85.9 1.0 CG A:ASN124 4.1 63.2 1.0 CZ A:PHE181 4.1 58.9 1.0 CA A:LYS121 4.3 48.9 1.0 O A:LYS121 4.5 52.4 1.0 CB A:LYS121 4.5 51.6 1.0 CE1 A:PHE181 4.7 60.9 1.0 C A:LYS121 4.9 52.4 1.0 CD A:LYS121 4.9 65.0 1.0

Bromine binding site 7 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br607 b:0.5 occ:1.00 OG1 A:THR273 3.2 93.8 1.0 CD A:ARG275 3.7 95.6 1.0 CG A:GLU82 3.7 80.5 1.0 CB A:ARG275 3.8 83.2 1.0 CB A:THR273 3.8 93.7 1.0 CB A:GLU82 3.8 65.4 1.0 CG2 A:THR273 3.9 92.5 1.0 O A:HOH750 4.2 61.6 1.0 CG A:ARG275 4.3 89.7 1.0 CA A:GLU82 4.3 64.3 1.0 CD A:GLU82 4.4 0.3 1.0 NH1 A:ARG275 4.5 0.8 1.0 OE1 A:GLU82 4.5 99.0 1.0 N A:GLU82 4.6 63.9 1.0 O A:THR78 4.7 64.5 1.0 CG2 A:THR78 4.9 67.0 1.0 NE A:ARG275 4.9 0.3 1.0 CA A:ARG275 5.0 84.7 1.0

Bromine binding site 8 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br608 b:98.6 occ:1.00 O A:HOH762 3.5 54.2 1.0 N A:GLY157 3.6 61.3 1.0 CA A:GLY157 3.8 62.4 1.0 C A:PHE156 3.8 63.3 1.0 O A:HOH778 3.9 39.5 1.0 O A:PHE156 4.1 62.5 1.0 N A:PHE156 4.2 59.9 1.0 CA A:PHE156 4.4 58.9 1.0 CB A:PHE156 4.7 59.0 1.0

Bromine binding site 9 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br609 b:0.6 occ:1.00 N A:ASP193 3.4 78.9 1.0 ND2 A:ASN196 3.4 94.9 1.0 OD2 A:ASP193 3.7 0.2 1.0 ND2 A:ASN158 3.8 78.8 1.0 CE3 A:TRP192 3.9 74.0 1.0 CG A:ASP193 3.9 98.8 1.0 CB A:ASP193 3.9 85.9 1.0 CA A:TRP192 4.1 71.5 1.0 CG A:ASN158 4.2 85.6 1.0 C A:TRP192 4.3 78.6 1.0 CA A:ASP193 4.3 81.1 1.0 CB A:TRP192 4.4 70.8 1.0 CG A:ASN196 4.4 0.1 1.0 CB A:ASN196 4.4 84.0 1.0 OD1 A:ASP193 4.6 98.1 1.0 OD1 A:ASN158 4.7 77.8 1.0 CZ3 A:TRP192 4.7 75.6 1.0 CB A:ASN158 4.8 66.8 1.0 CD2 A:TRP192 4.8 71.0 1.0 O A:ASP193 5.0 86.7 1.0

Bromine binding site 10 out of 25 in the Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of VP5 From Haloarchaeal Pleomorphic Virus 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br610 b:0.8 occ:1.00 NE A:ARG187 3.5 78.4 1.0 NH1 A:ARG187 3.7 79.9 1.0 CZ A:ARG187 4.1 92.9 1.0 ND2 A:ASN189 4.1 88.1 1.0 CB A:ASN189 4.3 64.0 1.0 O A:HOH746 4.4 69.1 1.0 CD A:ARG187 4.5 70.8 1.0 CG A:ASN189 4.6 93.9 1.0 O A:HOH795 4.7 59.8 1.0

K.El Omari, S.Li, A.Kotecha, T.S.Walter, E.A.Bignon, K.Harlos, P.Somerharju, F.De Haas, D.K.Clare, M.Molin, F.Hurtado, M.Li, J.M.Grimes, D.H.Bamford, N.D.Tischler, J.T.Huiskonen, D.I.Stuart, E.Roine. The Structure of A Prokaryotic Viral Envelope Protein Expands the Landscape of Membrane Fusion Proteins. Nat Commun V. 10 846 2019.
ISSN: ESSN 2041-1723
PubMed: 30783086
DOI: 10.1038/S41467-019-08728-7