Bromine in PDB 6r9k: A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues

The binding sites of Bromine atom in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues (pdb code 6r9k). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues, PDB code: 6r9k:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:Br6 b:0.0 occ:1.00 BR A:BGM6 0.0 0.0 1.0 C8 A:BGM6 1.9 0.0 1.0 N7 A:BGM6 2.8 0.0 1.0 H1' A:BGM6 2.8 0.0 1.0 N9 A:BGM6 2.9 0.0 1.0 C1' A:BGM6 3.4 0.0 1.0 H21 A:DG20 3.5 0.0 1.0 O4' A:BGM7 3.8 0.0 1.0 H22 A:DG21 3.8 0.0 1.0 H22 A:DG20 3.8 0.0 1.0 N9 A:BGM7 3.9 0.0 1.0 C5 A:BGM6 4.0 0.0 1.0 N2 A:DG20 4.0 0.0 1.0 C4 A:BGM6 4.0 0.0 1.0 C8 A:BGM7 4.1 0.0 1.0 C4 A:BGM7 4.1 0.0 1.0 N2 A:DG21 4.3 0.0 1.0 H2' A:BGM6 4.3 0.0 1.0 C1' A:BGM7 4.4 0.0 1.0 N7 A:BGM7 4.4 0.0 1.0 O4' A:BGM6 4.4 0.0 1.0 C5 A:BGM7 4.5 0.0 1.0 C2' A:BGM6 4.5 0.0 1.0 H21 A:DG21 4.6 0.0 1.0 N3 A:BGM7 4.7 0.0 1.0 H1' A:BGM7 4.7 0.0 1.0 BR A:BGM7 4.7 0.0 1.0 H5' A:BGM7 4.8 0.0 1.0 C2 A:DG21 4.9 0.0 1.0

Bromine binding site 2 out of 2 in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of A Quadruplex Hybrid Structure with Lpp Loop Orientation and 3 Syn Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:Br7 b:0.0 occ:1.00 BR A:BGM7 0.0 0.0 1.0 C8 A:BGM7 1.9 0.0 1.0 N7 A:BGM7 2.8 0.0 1.0 H1' A:BGM7 2.9 0.0 1.0 N9 A:BGM7 2.9 0.0 1.0 C1' A:BGM7 3.4 0.0 1.0 H21 A:DG19 3.5 0.0 1.0 H22 A:DG19 3.8 0.0 1.0 C5 A:BGM7 4.0 0.0 1.0 C4 A:BGM7 4.0 0.0 1.0 N2 A:DG19 4.0 0.0 1.0 H61 A:DA10 4.1 0.0 1.0 H22 A:DG20 4.2 0.0 1.0 O4' A:BGM7 4.3 0.0 1.0 H2' A:BGM7 4.5 0.0 1.0 C2' A:BGM7 4.6 0.0 1.0 N6 A:DA10 4.6 0.0 1.0 N2 A:DG20 4.6 0.0 1.0 BR A:BGM6 4.7 0.0 1.0 H21 A:DG20 4.8 0.0 1.0

B.Karg, S.Mohr, K.Weisz. Duplex-Guided Refolding Into Novel G-Quadruplex (3+1) Hybrid Conformations. Angew.Chem.Int.Ed.Engl. V. 58 11068 2019.
ISSN: ESSN 1521-3773
PubMed: 31134741
DOI: 10.1002/ANIE.201905372