Bromine in PDB 6r9l: A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues

The binding sites of Bromine atom in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues (pdb code 6r9l). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues, PDB code: 6r9l:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:Br15 b:0.0 occ:1.00 BR A:BGM15 0.0 0.0 1.0 C8 A:BGM15 1.9 0.0 1.0 N7 A:BGM15 2.8 0.0 1.0 H1' A:BGM15 2.9 0.0 1.0 N9 A:BGM15 2.9 0.0 1.0 O4' A:DG16 3.4 0.0 1.0 C1' A:BGM15 3.4 0.0 1.0 H21 A:BGM19 3.7 0.0 1.0 H5' A:DG16 3.9 0.0 1.0 C5 A:BGM15 4.0 0.0 1.0 C4 A:BGM15 4.0 0.0 1.0 H22 A:BGM19 4.1 0.0 1.0 H4' A:DG16 4.1 0.0 1.0 C4' A:DG16 4.2 0.0 1.0 N2 A:BGM19 4.3 0.0 1.0 C1' A:DG16 4.3 0.0 1.0 O4' A:BGM15 4.4 0.0 1.0 H2' A:BGM15 4.4 0.0 1.0 H1' A:DG16 4.4 0.0 1.0 N9 A:DG16 4.5 0.0 1.0 C2' A:BGM15 4.6 0.0 1.0 C5' A:DG16 4.6 0.0 1.0 C4 A:DG16 4.9 0.0 1.0

Bromine binding site 2 out of 2 in the A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of A Quadruplex Hybrid Structure with Lpp Loop Orientation and 5 Syn Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:Br19 b:0.0 occ:1.00 BR A:BGM19 0.0 0.0 1.0 C8 A:BGM19 1.9 0.0 1.0 N7 A:BGM19 2.8 0.0 1.0 H1' A:BGM19 2.8 0.0 1.0 N9 A:BGM19 2.9 0.0 1.0 H3 A:DT8 3.1 0.0 1.0 C1' A:BGM19 3.4 0.0 1.0 O4' A:DG20 3.4 0.0 1.0 O4 A:DT8 3.5 0.0 1.0 N3 A:DT8 3.9 0.0 1.0 H21 A:DG7 3.9 0.0 1.0 C5 A:BGM19 4.0 0.0 1.0 H5' A:DG20 4.0 0.0 1.0 N3 A:DG20 4.0 0.0 1.0 C4 A:BGM19 4.0 0.0 1.0 H2' A:BGM19 4.0 0.0 1.0 C4 A:DG20 4.1 0.0 1.0 H22 A:DG7 4.1 0.0 1.0 C4 A:DT8 4.2 0.0 1.0 N9 A:DG20 4.2 0.0 1.0 C2' A:BGM19 4.3 0.0 1.0 C1' A:DG20 4.3 0.0 1.0 N2 A:DG7 4.4 0.0 1.0 C4' A:DG20 4.5 0.0 1.0 O4' A:BGM19 4.5 0.0 1.0 H4' A:DG20 4.6 0.0 1.0 C2 A:DG20 4.6 0.0 1.0 H1' A:DG20 4.6 0.0 1.0 C5 A:DG20 4.7 0.0 1.0 C5' A:DG20 4.7 0.0 1.0 C8 A:DG20 4.9 0.0 1.0 H2'' A:BGM19 5.0 0.0 1.0

B.Karg, S.Mohr, K.Weisz. Duplex-Guided Refolding Into Novel G-Quadruplex (3+1) Hybrid Conformations. Angew.Chem.Int.Ed.Engl. V. 58 11068 2019.
ISSN: ESSN 1521-3773
PubMed: 31134741
DOI: 10.1002/ANIE.201905372