Bromine in PDB 6ro3: 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf

Enzymatic activity of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf

All present enzymatic activity of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf:
3.2.1.17;

Protein crystallography data

The structure of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf, PDB code: 6ro3 was solved by A.Brink, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.97 / 1.03
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.940, 79.940, 36.460, 90.00, 90.00, 90.00
R / Rfree (%) 11.1 / 11.8

Other elements in 6ro3:

The structure of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf also contains other interesting chemical elements:

Rhenium (Re) 16 atoms
Chlorine (Cl) 4 atoms
Sodium (Na) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf (pdb code 6ro3). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf, PDB code: 6ro3:

Bromine binding site 1 out of 1 in 6ro3

Go back to Bromine Binding Sites List in 6ro3
Bromine binding site 1 out of 1 in the 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of 2YR-X: Lysozyme with Re Cluster 2 Year on Shelf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br213

b:10.2
occ:0.35
RE1 A:RRE211 2.5 10.2 0.8
C5 A:RRE211 3.1 11.3 0.8
O12 A:RRE211 3.2 11.8 0.8
NE2 A:HIS15 3.2 11.8 1.0
O A:HOH321 3.3 15.3 1.0
C4 A:RRE211 3.3 9.1 0.8
N A:ILE88 3.5 9.0 1.0
CD2 A:HIS15 3.5 10.8 1.0
CG1 A:ILE88 3.7 8.6 1.0
O5 A:RRE211 3.9 11.9 0.8
CB A:ALA11 3.9 10.2 1.0
CA A:ASP87 4.1 10.3 1.0
O A:SER86 4.1 11.1 1.0
OD1 A:ASP87 4.1 12.1 1.0
O4 A:RRE211 4.2 9.2 0.8
CZ A:PHE3 4.2 10.0 1.0
CG2 A:ILE88 4.2 9.1 1.0
CB A:ILE88 4.3 8.4 1.0
C A:ASP87 4.3 9.3 1.0
CE1 A:HIS15 4.4 11.7 1.0
C6 A:RRE211 4.4 10.2 0.8
CA A:ILE88 4.4 8.3 1.0
CD1 A:ILE88 4.4 9.2 1.0
CE1 A:PHE3 4.6 9.7 1.0
CG A:HIS15 4.7 11.2 1.0
CA A:ALA11 4.9 9.8 1.0

Reference:

A.Brink, J.R.Helliwell. Formation of A Highly Dense Tetra-Rhenium Cluster in A Protein Crystal and Its Implications in Medical Imaging. Iucrj V. 6 695 2019.
ISSN: ESSN 2052-2525
PubMed: 31316813
DOI: 10.1107/S2052252519006651
Page generated: Sat Dec 12 02:36:14 2020

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