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Bromine in PDB 6uif: Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction

Protein crystallography data

The structure of Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction, PDB code: 6uif was solved by B.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.51 / 1.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.825, 56.846, 64.786, 107.93, 91.21, 114.29
R / Rfree (%) 16.7 / 19.4

Other elements in 6uif:

The structure of Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction (pdb code 6uif). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction, PDB code: 6uif:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 6uif

Go back to Bromine Binding Sites List in 6uif
Bromine binding site 1 out of 2 in the Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br401

b:23.8
occ:1.00
BR1 A:Q8P401 0.0 23.8 1.0
C02 A:Q8P401 1.9 19.6 1.0
C03 A:Q8P401 2.8 15.6 1.0
C01 A:Q8P401 2.8 22.4 1.0
O A:TRP273 3.2 12.4 1.0
O A:SER267 3.6 17.7 1.0
N A:TRP273 3.6 16.5 1.0
C A:LYS272 3.8 19.8 1.0
CB A:LYS272 3.8 20.8 1.0
CA A:LYS272 3.8 18.9 1.0
CD2 A:PHE266 3.9 12.2 1.0
CB A:PHE266 3.9 12.6 1.0
CD2 A:LEU288 4.0 19.9 1.0
N A:SER267 4.0 12.3 1.0
C A:TRP273 4.0 15.8 1.0
CD1 A:LEU288 4.1 21.0 1.0
C06 A:Q8P401 4.1 28.4 1.0
C04 A:Q8P401 4.1 22.2 1.0
CA A:PHE266 4.3 9.7 1.0
C A:SER267 4.3 15.3 1.0
CG A:LEU288 4.4 19.7 1.0
CA A:TRP273 4.4 15.5 1.0
CG A:PHE266 4.4 10.5 1.0
CB A:LEU288 4.4 22.5 1.0
CG A:LYS272 4.4 25.9 1.0
C A:PHE266 4.4 14.3 1.0
O A:LYS272 4.5 22.7 1.0
C05 A:Q8P401 4.6 29.1 1.0
CA A:SER267 4.8 15.7 1.0
CD1 A:ILE274 4.8 13.5 1.0
CG1 A:VAL268 4.8 17.7 1.0
O A:HOH630 4.9 25.7 1.0
CE2 A:PHE266 5.0 13.7 1.0

Bromine binding site 2 out of 2 in 6uif

Go back to Bromine Binding Sites List in 6uif
Bromine binding site 2 out of 2 in the Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Discovery of Fragment-Inspired Heterocyclic Benzenesulfonmides As Inhibitors of the WDR5-Myc Interaction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br401

b:23.1
occ:1.00
BR1 B:Q8P401 0.0 23.1 1.0
C02 B:Q8P401 1.9 18.5 1.0
C03 B:Q8P401 2.8 13.0 1.0
C01 B:Q8P401 2.8 23.3 1.0
O B:TRP273 3.2 13.4 1.0
O B:SER267 3.6 16.3 1.0
N B:TRP273 3.6 13.9 1.0
C B:LYS272 3.8 16.7 1.0
CB B:LYS272 3.8 17.4 1.0
N B:SER267 3.8 11.7 1.0
CD2 B:PHE266 3.8 12.6 1.0
CB B:PHE266 3.9 12.5 1.0
CA B:LYS272 3.9 15.1 1.0
C B:TRP273 3.9 13.2 1.0
CD2 B:LEU288 4.0 16.0 1.0
CD1 B:LEU288 4.0 14.4 1.0
CA B:PHE266 4.1 11.0 1.0
C06 B:Q8P401 4.1 20.4 1.0
C04 B:Q8P401 4.2 17.0 1.0
C B:SER267 4.2 11.8 1.0
C B:PHE266 4.3 11.9 1.0
CG B:PHE266 4.4 10.5 1.0
CA B:TRP273 4.4 13.2 1.0
CG B:LEU288 4.4 15.4 1.0
CB B:LEU288 4.4 14.6 1.0
CG B:LYS272 4.5 19.2 1.0
O B:LYS272 4.5 16.4 1.0
C05 B:Q8P401 4.7 22.5 1.0
CA B:SER267 4.7 16.4 1.0
CD1 B:ILE274 4.7 15.4 1.0
N B:ILE274 4.9 11.7 1.0
O B:HOH648 5.0 16.9 1.0
CE2 B:PHE266 5.0 15.3 1.0
CD B:LYS272 5.0 22.1 1.0

Reference:

S.Chacon Simon, F.Wang, L.R.Thomas, J.Phan, B.Zhao, E.T.Olejniczak, J.D.Macdonald, J.G.Shaw, C.Schlund, W.G.Payne, J.Creighton, S.Stauffer, A.G.Waterson, W.P.Tansey, S.W.Fesik. Discovery of Wd Repeat-Containing Protein 5 (WDR5)-Myc Inhibitors Using Fragment-Based Methods and Structure-Based Design. J.Med.Chem. 2020.
ISSN: ISSN 0022-2623
PubMed: 32223236
DOI: 10.1021/ACS.JMEDCHEM.0C00224
Page generated: Thu Jul 11 02:56:12 2024

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