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Bromine in PDB 6vhw: Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn

Protein crystallography data

The structure of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn, PDB code: 6vhw was solved by D.F.Kreitler, A.M.Gulick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.78 / 1.83
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.436, 60.284, 80.253, 90.00, 101.01, 90.00
R / Rfree (%) 20.1 / 23.1

Other elements in 6vhw:

The structure of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn (pdb code 6vhw). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn, PDB code: 6vhw:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in 6vhw

Go back to Bromine Binding Sites List in 6vhw
Bromine binding site 1 out of 3 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br505

b:50.1
occ:0.50
O A:HOH698 2.9 40.3 1.0
BR B:BR503 3.2 47.8 0.5
NH1 A:ARG252 3.2 40.5 1.0
N A:ASN276 3.5 38.3 1.0
CD1 A:LEU279 3.5 35.2 1.0
CD A:ARG252 3.9 30.8 1.0
CB A:ASN276 4.0 41.7 1.0
CA A:VAL275 4.1 37.5 1.0
O A:HOH613 4.2 40.8 1.0
NH1 B:ARG252 4.2 43.4 1.0
CG1 A:VAL275 4.3 38.1 1.0
CZ A:ARG252 4.3 40.1 1.0
C A:VAL275 4.3 39.0 1.0
CA A:ASN276 4.3 40.6 1.0
O A:PHE274 4.5 33.8 1.0
NE A:ARG252 4.5 35.5 1.0
O B:HOH664 4.6 51.8 1.0
CG A:LEU279 4.8 35.5 1.0
CB A:VAL275 4.8 38.2 1.0
CD B:ARG252 4.8 37.8 1.0
CG A:ARG252 4.8 28.7 1.0
CZ B:ARG252 4.9 43.3 1.0
CB A:ARG252 4.9 26.9 1.0

Bromine binding site 2 out of 3 in 6vhw

Go back to Bromine Binding Sites List in 6vhw
Bromine binding site 2 out of 3 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br503

b:47.8
occ:0.50
NH1 B:ARG252 2.8 43.4 1.0
BR A:BR505 3.2 50.1 0.5
N B:ASN276 3.5 36.7 1.0
CD1 B:LEU279 3.7 37.6 1.0
O B:HOH664 3.7 51.8 1.0
CD B:ARG252 4.0 37.8 1.0
CZ B:ARG252 4.0 43.3 1.0
CA B:VAL275 4.0 37.8 1.0
CB B:ASN276 4.2 40.5 1.0
C B:VAL275 4.3 37.8 1.0
O B:HOH604 4.3 47.1 1.0
CG1 B:VAL275 4.3 38.8 1.0
NH1 A:ARG252 4.4 40.5 1.0
O B:PHE274 4.4 33.0 1.0
NE B:ARG252 4.5 41.9 1.0
CA B:ASN276 4.5 38.6 1.0
CD A:ARG252 4.7 30.8 1.0
CB B:VAL275 4.8 38.7 1.0
CG B:ARG252 4.8 34.8 1.0
CZ A:ARG252 4.8 40.1 1.0
CG B:LEU279 4.9 38.2 1.0
O A:HOH698 5.0 40.3 1.0
NE A:ARG252 5.0 35.5 1.0

Bromine binding site 3 out of 3 in 6vhw

Go back to Bromine Binding Sites List in 6vhw
Bromine binding site 3 out of 3 in the Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Klebsiella Oxytoca Npsa N-Terminal Subdomain in Complex with 3- Hydroxybenzoyl-Amsn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br504

b:47.5
occ:0.75
O B:HOH618 3.2 46.3 1.0
N B:ASP26 3.6 46.2 1.0
CD B:PRO25 3.7 50.0 1.0
C B:PHE24 3.9 44.2 1.0
CA B:PHE24 3.9 45.1 1.0
N B:PRO25 3.9 46.4 1.0
CB B:ASP26 4.0 49.5 1.0
N B:ARG27 4.0 42.3 1.0
CA B:ASP26 4.1 46.1 1.0
CG B:ARG27 4.1 41.9 1.0
C B:ASP26 4.2 44.0 1.0
O B:PHE24 4.4 41.9 1.0
CG B:PRO25 4.4 51.7 1.0
O B:ARG23 4.6 55.2 1.0
C B:PRO25 4.6 44.9 1.0
CB B:PHE24 4.7 42.6 1.0
OD2 B:ASP26 4.7 54.9 1.0
CG B:ASP26 4.8 52.0 1.0
CA B:PRO25 4.8 45.8 1.0
CD1 B:PHE24 4.9 45.7 1.0
O B:ASP26 4.9 44.2 1.0
CA B:ARG27 4.9 40.2 1.0
CB B:ARG27 5.0 39.5 1.0
N B:PHE24 5.0 46.4 1.0

Reference:

E.M.Alexander, D.F.Kreitler, V.Guidolin, A.K.Hurben, E.J.Drake, P.W.Villalta, S.Balbo, A.M.Gulick, C.C.Aldrich. Biosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced By the Opportunistic Pathogen Klebsiella Oxytoca. Acs Infect Dis. 2020.
ISSN: ESSN 2373-8227
PubMed: 32485104
DOI: 10.1021/ACSINFECDIS.0C00326
Page generated: Thu Jul 11 03:02:29 2024

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