Bromine in PDB 6xke: Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Protein crystallography data
The structure of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus, PDB code: 6xke
was solved by
J.F.Andersen,
E.Strayer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
52.41 /
1.55
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.68,
137.68,
61.14,
90,
90,
90
|
R / Rfree (%)
|
18.3 /
20.3
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
(pdb code 6xke). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 8 binding sites of Bromine where determined in the
Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus, PDB code: 6xke:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Bromine binding site 1 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 1 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:44.1
occ:1.00
|
NE
|
A:ARG38
|
3.4
|
27.6
|
1.0
|
CG
|
A:GLU39
|
3.8
|
22.0
|
1.0
|
NH2
|
A:ARG38
|
3.8
|
36.1
|
1.0
|
CA
|
A:GLU39
|
4.0
|
16.3
|
1.0
|
CG1
|
A:ILE42
|
4.0
|
18.8
|
1.0
|
CZ
|
A:ARG38
|
4.1
|
31.9
|
1.0
|
CB
|
A:ILE42
|
4.1
|
18.1
|
1.0
|
O
|
A:HOH360
|
4.2
|
28.5
|
1.0
|
CG2
|
A:ILE42
|
4.2
|
19.3
|
1.0
|
N
|
A:GLU39
|
4.3
|
15.6
|
1.0
|
CG
|
A:ARG38
|
4.3
|
18.3
|
1.0
|
CD
|
A:ARG38
|
4.4
|
21.4
|
1.0
|
O
|
A:ARG38
|
4.4
|
15.8
|
1.0
|
CB
|
A:GLU39
|
4.4
|
19.9
|
1.0
|
C
|
A:ARG38
|
4.5
|
17.7
|
1.0
|
CD2
|
A:LEU9
|
4.6
|
22.9
|
1.0
|
CB
|
A:ARG38
|
4.9
|
14.9
|
1.0
|
CD
|
A:GLU39
|
5.0
|
29.0
|
1.0
|
|
Bromine binding site 2 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 2 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br202
b:41.4
occ:1.00
|
OG1
|
A:THR52
|
3.1
|
28.9
|
1.0
|
NH2
|
A:ARG115
|
3.1
|
41.1
|
1.0
|
N
|
A:LEU49
|
3.4
|
20.6
|
1.0
|
NH1
|
A:ARG115
|
3.4
|
36.4
|
1.0
|
CZ
|
A:ARG115
|
3.7
|
34.1
|
1.0
|
CA
|
A:TYR48
|
3.7
|
18.4
|
1.0
|
O
|
A:HOH330
|
3.8
|
32.4
|
1.0
|
CG
|
A:LEU49
|
3.9
|
28.3
|
1.0
|
CB
|
A:THR52
|
4.1
|
21.6
|
1.0
|
C
|
A:TYR48
|
4.1
|
19.6
|
1.0
|
CB
|
A:TYR48
|
4.2
|
17.8
|
1.0
|
CB
|
A:LEU49
|
4.2
|
25.4
|
1.0
|
CG2
|
A:THR52
|
4.3
|
23.6
|
1.0
|
CD1
|
A:TYR48
|
4.3
|
20.9
|
1.0
|
CA
|
A:LEU49
|
4.4
|
23.2
|
1.0
|
CG
|
A:TYR48
|
4.5
|
17.8
|
1.0
|
CD1
|
A:LEU49
|
4.7
|
30.1
|
1.0
|
O
|
A:GLY47
|
4.7
|
23.0
|
1.0
|
CD2
|
A:LEU49
|
4.9
|
35.4
|
1.0
|
N
|
A:TYR48
|
4.9
|
19.6
|
1.0
|
|
Bromine binding site 3 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 3 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br201
b:31.4
occ:1.00
|
O
|
B:HOH426
|
2.7
|
31.5
|
1.0
|
O
|
B:HOH359
|
3.1
|
13.8
|
1.0
|
O
|
B:HOH401
|
3.2
|
17.5
|
1.0
|
O
|
B:HOH443
|
3.7
|
30.5
|
1.0
|
O
|
B:HOH344
|
4.0
|
27.1
|
1.0
|
CG2
|
B:ILE15
|
4.0
|
17.7
|
1.0
|
CG
|
B:LYS30
|
4.0
|
12.7
|
1.0
|
CD1
|
B:ILE33
|
4.1
|
12.7
|
1.0
|
CG2
|
B:ILE33
|
4.1
|
12.3
|
1.0
|
CB
|
B:ILE15
|
4.3
|
17.0
|
1.0
|
CD1
|
B:LEU17
|
4.4
|
18.3
|
1.0
|
CB
|
B:ILE33
|
4.4
|
10.6
|
1.0
|
NH1
|
B:ARG38
|
4.5
|
12.8
|
1.0
|
CB
|
B:LYS30
|
4.5
|
10.2
|
1.0
|
CD1
|
B:ILE15
|
4.6
|
16.9
|
1.0
|
CD
|
B:LYS30
|
4.6
|
17.9
|
1.0
|
CA
|
B:LYS30
|
4.7
|
9.1
|
1.0
|
CG
|
B:LEU17
|
4.8
|
18.9
|
1.0
|
CG1
|
B:ILE33
|
4.9
|
10.0
|
1.0
|
O
|
B:HOH423
|
4.9
|
25.0
|
1.0
|
CE
|
B:LYS30
|
4.9
|
23.0
|
1.0
|
O
|
B:HOH395
|
5.0
|
26.1
|
1.0
|
|
Bromine binding site 4 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 4 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br202
b:28.4
occ:1.00
|
NH2
|
B:ARG96
|
2.7
|
27.0
|
1.0
|
O
|
B:HOH411
|
3.2
|
34.6
|
1.0
|
NH2
|
C:ARG43
|
3.3
|
17.4
|
1.0
|
O
|
B:HOH357
|
3.3
|
16.2
|
1.0
|
CZ
|
B:ARG96
|
3.6
|
21.0
|
1.0
|
NE
|
C:ARG43
|
3.7
|
13.5
|
1.0
|
NH1
|
B:ARG96
|
3.7
|
24.2
|
1.0
|
CA
|
B:ALA28
|
3.7
|
9.5
|
1.0
|
O
|
B:HOH420
|
3.7
|
18.9
|
1.0
|
CB
|
B:ALA28
|
3.9
|
10.1
|
1.0
|
CZ
|
C:ARG43
|
3.9
|
14.4
|
1.0
|
N
|
B:ALA28
|
4.0
|
10.4
|
1.0
|
CG2
|
B:THR27
|
4.2
|
11.7
|
1.0
|
C
|
B:THR27
|
4.3
|
11.2
|
1.0
|
O
|
B:THR27
|
4.4
|
10.4
|
1.0
|
CB
|
B:TYR31
|
4.7
|
9.8
|
1.0
|
NE
|
B:ARG96
|
4.8
|
29.5
|
1.0
|
CD
|
C:ARG43
|
4.9
|
12.0
|
1.0
|
CB
|
B:THR27
|
4.9
|
10.3
|
1.0
|
CG
|
B:TYR31
|
5.0
|
10.9
|
1.0
|
|
Bromine binding site 5 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 5 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br203
b:45.4
occ:1.00
|
NH2
|
B:ARG43
|
3.4
|
26.1
|
1.0
|
O
|
C:HOH322
|
3.5
|
24.4
|
1.0
|
NH1
|
C:ARG96
|
3.6
|
28.6
|
1.0
|
NH2
|
C:ARG96
|
3.7
|
30.5
|
1.0
|
CA
|
C:ALA28
|
3.7
|
13.1
|
1.0
|
O
|
C:HOH401
|
3.8
|
25.9
|
1.0
|
CB
|
C:ALA28
|
3.9
|
14.5
|
1.0
|
CG2
|
C:THR27
|
3.9
|
18.7
|
1.0
|
N
|
C:ALA28
|
3.9
|
14.6
|
1.0
|
CZ
|
C:ARG96
|
4.0
|
26.4
|
1.0
|
NE
|
B:ARG43
|
4.3
|
19.9
|
1.0
|
C
|
C:THR27
|
4.3
|
16.2
|
1.0
|
CZ
|
B:ARG43
|
4.3
|
28.8
|
1.0
|
O
|
C:THR27
|
4.4
|
14.1
|
1.0
|
CB
|
C:THR27
|
4.7
|
18.1
|
1.0
|
O
|
B:HOH441
|
4.8
|
33.0
|
1.0
|
CB
|
C:TYR31
|
4.8
|
12.7
|
1.0
|
|
Bromine binding site 6 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 6 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br204
b:32.8
occ:1.00
|
OG1
|
B:THR52
|
3.1
|
27.9
|
1.0
|
N
|
B:LEU49
|
3.4
|
20.8
|
1.0
|
NH2
|
B:ARG115
|
3.4
|
30.4
|
1.0
|
NH1
|
B:ARG115
|
3.5
|
28.4
|
1.0
|
CA
|
B:TYR48
|
3.8
|
16.4
|
1.0
|
CZ
|
B:ARG115
|
3.9
|
27.7
|
1.0
|
C
|
B:TYR48
|
4.1
|
17.3
|
1.0
|
CG
|
B:LEU49
|
4.1
|
28.5
|
1.0
|
CB
|
B:THR52
|
4.1
|
23.6
|
1.0
|
CB
|
B:LEU49
|
4.1
|
23.8
|
1.0
|
CD1
|
B:TYR48
|
4.3
|
15.6
|
1.0
|
CB
|
B:TYR48
|
4.3
|
17.2
|
1.0
|
CG2
|
B:THR52
|
4.3
|
21.7
|
1.0
|
CA
|
B:LEU49
|
4.4
|
21.2
|
1.0
|
CG
|
B:TYR48
|
4.6
|
17.7
|
1.0
|
O
|
B:GLY47
|
4.6
|
20.0
|
1.0
|
CD1
|
B:LEU49
|
4.7
|
32.0
|
1.0
|
N
|
B:TYR48
|
4.9
|
15.5
|
1.0
|
|
Bromine binding site 7 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 7 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br201
b:31.8
occ:1.00
|
OG1
|
C:THR52
|
3.2
|
31.5
|
1.0
|
NH2
|
C:ARG115
|
3.2
|
34.5
|
1.0
|
N
|
C:LEU49
|
3.3
|
22.4
|
1.0
|
NH1
|
C:ARG115
|
3.4
|
32.0
|
1.0
|
CA
|
C:TYR48
|
3.8
|
20.1
|
1.0
|
CZ
|
C:ARG115
|
3.8
|
30.8
|
1.0
|
CG
|
C:LEU49
|
4.0
|
30.9
|
1.0
|
C
|
C:TYR48
|
4.1
|
22.8
|
1.0
|
CB
|
C:THR52
|
4.1
|
28.0
|
1.0
|
CB
|
C:LEU49
|
4.1
|
26.1
|
1.0
|
CG2
|
C:THR52
|
4.3
|
26.6
|
1.0
|
CA
|
C:LEU49
|
4.3
|
25.9
|
1.0
|
CD1
|
C:TYR48
|
4.4
|
19.2
|
1.0
|
CB
|
C:TYR48
|
4.4
|
22.2
|
1.0
|
CD1
|
C:LEU49
|
4.4
|
33.3
|
1.0
|
O
|
C:GLY47
|
4.5
|
22.9
|
1.0
|
CG
|
C:TYR48
|
4.7
|
20.2
|
1.0
|
N
|
C:TYR48
|
4.8
|
19.5
|
1.0
|
|
Bromine binding site 8 out
of 8 in 6xke
Go back to
Bromine Binding Sites List in 6xke
Bromine binding site 8 out
of 8 in the Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Structure of A Mosquito Complement Inhibitor From Anopheles Albimanus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br202
b:20.0
occ:0.46
|
O
|
C:HOH428
|
3.1
|
28.2
|
0.4
|
N
|
C:SER23
|
3.3
|
16.9
|
1.0
|
CB
|
C:SER23
|
3.9
|
20.5
|
1.0
|
CE1
|
C:PHE24
|
3.9
|
23.6
|
1.0
|
CA
|
C:LYS22
|
4.0
|
16.9
|
1.0
|
CD1
|
C:PHE24
|
4.0
|
21.1
|
1.0
|
OG
|
C:SER23
|
4.0
|
21.6
|
1.0
|
CD
|
C:LYS22
|
4.1
|
19.4
|
1.0
|
C
|
C:LYS22
|
4.1
|
17.1
|
1.0
|
CA
|
C:SER23
|
4.2
|
16.6
|
1.0
|
CB
|
C:LYS22
|
4.3
|
17.7
|
1.0
|
N
|
C:PHE24
|
4.7
|
19.2
|
1.0
|
CG
|
C:LYS22
|
4.8
|
18.2
|
1.0
|
|
Reference:
E.C.Strayer,
S.Lu,
J.M.Ribeiro,
J.F.Andersen.
Salivary Complement Inhibitors From Mosquitoes: Structure and Mechanism of Action. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33199367
DOI: 10.1074/JBC.RA120.015230
Page generated: Thu Jul 11 03:05:48 2024
|