Bromine in PDB 6xtd: RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Protein crystallography data
The structure of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1, PDB code: 6xtd
was solved by
M.R.Hagan,
B.Hunter,
S.Coulthurst,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.42 /
1.30
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
39.655,
44.108,
46.807,
101.2,
96.13,
114.15
|
R / Rfree (%)
|
12.1 /
16.5
|
Bromine Binding Sites:
The binding sites of Bromine atom in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
(pdb code 6xtd). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the
RHS1-Ct in Complex with Cognate Immunity Protein RHSI1, PDB code: 6xtd:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
Bromine binding site 1 out
of 6 in 6xtd
Go back to
Bromine Binding Sites List in 6xtd
Bromine binding site 1 out
of 6 in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br1501
b:24.4
occ:0.50
|
O
|
A:HOH1780
|
3.0
|
40.2
|
1.0
|
NE2
|
A:GLN1352
|
3.2
|
22.9
|
1.0
|
N
|
B:VAL95
|
3.4
|
15.1
|
1.0
|
O
|
B:HOH424
|
3.5
|
28.3
|
1.0
|
CB
|
B:LYS94
|
3.7
|
25.5
|
1.0
|
CG2
|
B:VAL95
|
3.8
|
18.2
|
1.0
|
CG
|
A:GLN1352
|
3.9
|
19.7
|
1.0
|
CA
|
B:LYS94
|
3.9
|
19.7
|
1.0
|
CB
|
B:VAL95
|
4.0
|
14.4
|
1.0
|
CD
|
A:GLN1352
|
4.0
|
20.1
|
1.0
|
C
|
B:LYS94
|
4.1
|
14.8
|
1.0
|
O
|
B:HOH495
|
4.2
|
55.3
|
1.0
|
CA
|
B:VAL95
|
4.3
|
15.2
|
1.0
|
CG
|
B:LYS94
|
4.3
|
34.8
|
1.0
|
CD
|
B:LYS94
|
4.7
|
45.3
|
1.0
|
O
|
A:HOH1719
|
4.8
|
33.1
|
1.0
|
|
Bromine binding site 2 out
of 6 in 6xtd
Go back to
Bromine Binding Sites List in 6xtd
Bromine binding site 2 out
of 6 in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br1502
b:44.9
occ:0.60
|
O
|
A:HOH1774
|
3.3
|
53.8
|
1.0
|
O
|
B:HOH323
|
3.5
|
28.0
|
1.0
|
CA
|
A:ASP1441
|
3.5
|
13.8
|
0.5
|
CA
|
A:ASP1441
|
3.5
|
13.7
|
0.5
|
O
|
A:HOH1711
|
3.6
|
32.4
|
1.0
|
CD2
|
B:HIS146
|
3.6
|
37.7
|
1.0
|
N
|
A:ASP1441
|
3.8
|
13.1
|
1.0
|
OD1
|
A:ASP1441
|
3.8
|
18.6
|
0.5
|
CB
|
A:ASP1441
|
3.9
|
14.8
|
0.5
|
CB
|
A:ASP1441
|
3.9
|
16.0
|
0.5
|
O
|
A:HOH1712
|
4.2
|
35.5
|
1.0
|
C
|
A:GLN1440
|
4.2
|
13.8
|
1.0
|
CD
|
A:PRO1442
|
4.3
|
16.6
|
1.0
|
OE1
|
B:GLU150
|
4.3
|
38.7
|
0.5
|
O
|
A:HOH1702
|
4.3
|
48.2
|
1.0
|
CG
|
A:ASP1441
|
4.4
|
19.5
|
0.5
|
CG
|
A:ASP1441
|
4.4
|
14.6
|
0.5
|
O
|
A:GLN1440
|
4.4
|
14.9
|
1.0
|
NE2
|
B:HIS146
|
4.5
|
43.2
|
1.0
|
O
|
A:SER1439
|
4.5
|
16.4
|
1.0
|
CG
|
B:HIS146
|
4.6
|
33.7
|
1.0
|
OD1
|
A:ASP1441
|
4.6
|
18.9
|
0.5
|
C
|
A:ASP1441
|
4.8
|
13.8
|
1.0
|
OE2
|
B:GLU150
|
4.8
|
24.1
|
0.5
|
CB
|
B:HIS146
|
4.9
|
26.1
|
1.0
|
CD
|
B:GLU150
|
5.0
|
26.1
|
0.5
|
N
|
A:PRO1442
|
5.0
|
13.4
|
1.0
|
OD2
|
A:ASP1441
|
5.0
|
18.8
|
0.5
|
|
Bromine binding site 3 out
of 6 in 6xtd
Go back to
Bromine Binding Sites List in 6xtd
Bromine binding site 3 out
of 6 in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br201
b:29.8
occ:0.75
|
OD1
|
B:ASP149
|
2.5
|
30.5
|
0.5
|
O
|
B:HOH437
|
3.1
|
34.9
|
1.0
|
CG
|
B:ASP149
|
3.7
|
22.9
|
0.5
|
NZ
|
B:LYS153
|
3.9
|
50.1
|
1.0
|
CB
|
B:ARG152
|
3.9
|
16.5
|
1.0
|
CB
|
B:ASP149
|
3.9
|
15.8
|
0.5
|
CA
|
B:ASP149
|
4.0
|
14.8
|
0.5
|
CD
|
B:ARG152
|
4.0
|
20.8
|
1.0
|
CA
|
B:ASP149
|
4.1
|
15.7
|
0.5
|
O
|
B:ASP149
|
4.1
|
16.1
|
1.0
|
CG
|
B:LYS153
|
4.3
|
19.2
|
1.0
|
CB
|
B:ASP149
|
4.4
|
19.2
|
0.5
|
O
|
B:HOH481
|
4.5
|
56.6
|
1.0
|
CE
|
B:LYS153
|
4.6
|
36.3
|
1.0
|
CG
|
B:ARG152
|
4.6
|
17.2
|
1.0
|
OD2
|
B:ASP149
|
4.6
|
31.8
|
0.5
|
C
|
B:ASP149
|
4.6
|
15.4
|
1.0
|
CD
|
B:LYS153
|
4.8
|
27.0
|
1.0
|
N
|
B:LYS153
|
4.9
|
15.0
|
1.0
|
|
Bromine binding site 4 out
of 6 in 6xtd
Go back to
Bromine Binding Sites List in 6xtd
Bromine binding site 4 out
of 6 in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br202
b:43.6
occ:0.65
|
O
|
B:HOH493
|
2.8
|
42.6
|
1.0
|
O
|
B:HOH503
|
2.9
|
56.7
|
1.0
|
O
|
B:HOH380
|
3.3
|
49.1
|
1.0
|
CB
|
B:ALA58
|
3.7
|
20.7
|
1.0
|
CA
|
B:ALA58
|
4.0
|
17.9
|
1.0
|
CD2
|
B:LEU87
|
4.1
|
17.8
|
1.0
|
CE
|
B:LYS57
|
4.4
|
41.5
|
1.0
|
CG
|
B:LEU87
|
4.5
|
14.9
|
1.0
|
N
|
B:ALA58
|
4.5
|
17.5
|
1.0
|
CG
|
B:LYS57
|
4.6
|
24.8
|
1.0
|
CB
|
B:LYS86
|
4.6
|
22.5
|
1.0
|
NZ
|
B:LYS86
|
4.6
|
50.7
|
1.0
|
O
|
B:LYS57
|
4.7
|
18.5
|
1.0
|
CD1
|
B:LEU87
|
4.7
|
17.8
|
1.0
|
C
|
B:LYS57
|
4.7
|
18.0
|
1.0
|
CD
|
B:LYS86
|
4.8
|
38.3
|
1.0
|
CD
|
B:LYS57
|
4.8
|
33.5
|
1.0
|
O
|
B:HOH469
|
4.9
|
35.1
|
1.0
|
|
Bromine binding site 5 out
of 6 in 6xtd
Go back to
Bromine Binding Sites List in 6xtd
Bromine binding site 5 out
of 6 in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br203
b:34.0
occ:0.45
|
O
|
B:HIS146
|
3.0
|
27.2
|
1.0
|
O
|
B:HOH472
|
3.3
|
40.5
|
1.0
|
C
|
B:HIS146
|
3.3
|
20.0
|
1.0
|
NH2
|
B:ARG142
|
3.4
|
21.9
|
1.0
|
O
|
B:HOH345
|
3.5
|
35.4
|
1.0
|
NH1
|
B:ARG142
|
3.6
|
20.3
|
1.0
|
O
|
B:PHE145
|
3.6
|
19.3
|
1.0
|
CA
|
B:THR147
|
3.6
|
16.1
|
1.0
|
N
|
B:THR147
|
3.6
|
15.8
|
1.0
|
C
|
B:THR147
|
3.7
|
16.8
|
1.0
|
O
|
B:HOH329
|
3.8
|
41.1
|
1.0
|
N
|
B:GLU148
|
3.8
|
15.7
|
1.0
|
CZ
|
B:ARG142
|
3.9
|
18.4
|
1.0
|
CA
|
B:HIS146
|
4.2
|
19.6
|
1.0
|
O
|
B:THR147
|
4.3
|
15.0
|
1.0
|
C
|
B:PHE145
|
4.5
|
16.6
|
1.0
|
CA
|
B:GLU148
|
4.7
|
15.3
|
1.0
|
N
|
B:HIS146
|
4.8
|
16.0
|
1.0
|
O
|
B:HOH457
|
4.9
|
49.9
|
1.0
|
O
|
B:HOH474
|
4.9
|
40.1
|
1.0
|
|
Bromine binding site 6 out
of 6 in 6xtd
Go back to
Bromine Binding Sites List in 6xtd
Bromine binding site 6 out
of 6 in the RHS1-Ct in Complex with Cognate Immunity Protein RHSI1
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br204
b:41.1
occ:0.60
|
O
|
B:HOH440
|
2.4
|
33.9
|
1.0
|
O
|
B:HOH494
|
2.8
|
50.0
|
1.0
|
O
|
B:HOH441
|
3.2
|
22.9
|
1.0
|
N
|
B:LYS93
|
3.2
|
19.2
|
1.0
|
N
|
B:LYS94
|
3.4
|
19.0
|
1.0
|
CG
|
B:GLN92
|
3.7
|
14.7
|
1.0
|
O
|
B:GLU96
|
3.8
|
21.3
|
1.0
|
CA
|
B:LYS93
|
3.9
|
20.6
|
0.5
|
CA
|
B:LYS93
|
3.9
|
18.6
|
0.5
|
CB
|
B:LYS93
|
4.0
|
21.9
|
0.5
|
CA
|
B:GLY97
|
4.1
|
16.7
|
1.0
|
CB
|
B:LYS94
|
4.1
|
25.5
|
1.0
|
C
|
B:GLN92
|
4.1
|
16.8
|
1.0
|
CB
|
B:LYS93
|
4.1
|
19.2
|
0.5
|
C
|
B:LYS93
|
4.1
|
21.5
|
1.0
|
CG
|
B:LYS94
|
4.1
|
34.8
|
1.0
|
CA
|
B:GLN92
|
4.2
|
17.5
|
1.0
|
CA
|
B:LYS94
|
4.2
|
19.7
|
1.0
|
O
|
B:LYS94
|
4.5
|
16.4
|
1.0
|
CB
|
B:GLN92
|
4.6
|
15.2
|
1.0
|
CG
|
B:LYS93
|
4.6
|
26.6
|
0.5
|
C
|
B:GLU96
|
4.7
|
19.4
|
1.0
|
C
|
B:LYS94
|
4.8
|
14.8
|
1.0
|
N
|
B:GLY97
|
4.8
|
16.3
|
1.0
|
CD
|
B:GLN92
|
4.8
|
15.0
|
1.0
|
CD
|
B:LYS94
|
4.8
|
45.3
|
1.0
|
|
Reference:
M.Hagan,
S.Coulthurst.
RHS1-Ct in Complex with Cognate Immunity Protein RHSI1 To Be Published.
Page generated: Thu Jul 11 03:07:02 2024
|