Bromine in PDB 6y3a: Structure of Plasmodium Vivax Phosphoglycerate Kinase

Enzymatic activity of Structure of Plasmodium Vivax Phosphoglycerate Kinase

All present enzymatic activity of Structure of Plasmodium Vivax Phosphoglycerate Kinase:
2.7.2.3;

Protein crystallography data

The structure of Structure of Plasmodium Vivax Phosphoglycerate Kinase, PDB code: 6y3a was solved by B.K.Blaszczyk, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.88 / 1.49
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.340, 84.120, 125.520, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 19.5

Other elements in 6y3a:

The structure of Structure of Plasmodium Vivax Phosphoglycerate Kinase also contains other interesting chemical elements:

Potassium (K) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of Plasmodium Vivax Phosphoglycerate Kinase (pdb code 6y3a). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure of Plasmodium Vivax Phosphoglycerate Kinase, PDB code: 6y3a:

Bromine binding site 1 out of 1 in 6y3a

Go back to Bromine Binding Sites List in 6y3a
Bromine binding site 1 out of 1 in the Structure of Plasmodium Vivax Phosphoglycerate Kinase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of Plasmodium Vivax Phosphoglycerate Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br502

b:51.9
occ:1.00
OG1 A:THR297 3.2 22.3 1.0
CA A:LYS298 3.5 19.5 1.0
N A:LYS298 3.7 19.5 1.0
C A:THR297 3.8 20.1 1.0
C A:LYS298 3.9 17.4 1.0
O A:THR297 3.9 21.9 1.0
CB A:THR297 3.9 19.7 1.0
CE A:LYS286 4.0 25.3 1.0
O A:HOH800 4.3 41.5 1.0
O A:LYS298 4.3 19.4 1.0
CG2 A:VAL299 4.4 19.6 1.0
N A:VAL299 4.4 19.1 1.0
CG A:LYS286 4.5 19.6 1.0
CA A:THR297 4.5 20.1 1.0
CD A:LYS286 4.6 22.3 1.0
NZ A:LYS286 4.7 25.5 1.0
O A:HOH739 4.7 41.8 1.0
O A:HOH896 4.8 24.7 1.0
CB A:LYS298 4.9 23.5 1.0

Reference:

E.Bilsland, F.Costa, B.K.Blaszczyk, M.Hyvonen, P.Sunnerhagen. Phosphoglycerate Kinase As A Potential Target For Antimalarial Therapy To Be Published.
Page generated: Sat Dec 12 02:41:07 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy