Bromine in PDB 6yid: Crystal Structure of ULK2 in Complex with Sbi-0206965
Enzymatic activity of Crystal Structure of ULK2 in Complex with Sbi-0206965
All present enzymatic activity of Crystal Structure of ULK2 in Complex with Sbi-0206965:
2.7.11.1;
Protein crystallography data
The structure of Crystal Structure of ULK2 in Complex with Sbi-0206965, PDB code: 6yid
was solved by
A.Chaikuad,
H.Ren,
N.A.Bakas,
L.J.Lambert,
N.D.P.Cosford,
S.Knapp,
Structural Genomics Consortium (Sgc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.55 /
2.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
75.968,
76.526,
95.244,
90.00,
97.03,
90.00
|
R / Rfree (%)
|
19.2 /
23.8
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of ULK2 in Complex with Sbi-0206965
(pdb code 6yid). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the
Crystal Structure of ULK2 in Complex with Sbi-0206965, PDB code: 6yid:
Jump to Bromine binding site number:
1;
2;
3;
4;
Bromine binding site 1 out
of 4 in 6yid
Go back to
Bromine Binding Sites List in 6yid
Bromine binding site 1 out
of 4 in the Crystal Structure of ULK2 in Complex with Sbi-0206965
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of ULK2 in Complex with Sbi-0206965 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br301
b:66.2
occ:1.00
|
BR5
|
A:EDJ301
|
0.0
|
66.2
|
1.0
|
C5
|
A:EDJ301
|
1.9
|
57.1
|
1.0
|
C6
|
A:EDJ301
|
2.8
|
60.3
|
1.0
|
C4
|
A:EDJ301
|
2.9
|
55.2
|
1.0
|
OAU
|
A:EDJ301
|
3.1
|
57.5
|
1.0
|
SD
|
A:MET85
|
3.6
|
59.8
|
1.0
|
CB
|
A:MET85
|
3.9
|
52.1
|
1.0
|
O
|
A:GLU86
|
4.0
|
54.3
|
1.0
|
CB
|
A:ALA37
|
4.0
|
52.5
|
1.0
|
OAE
|
A:EDJ301
|
4.1
|
67.7
|
1.0
|
N1
|
A:EDJ301
|
4.1
|
59.1
|
1.0
|
CG2
|
A:VAL69
|
4.2
|
58.3
|
1.0
|
N3
|
A:EDJ301
|
4.2
|
57.6
|
1.0
|
CE
|
A:MET85
|
4.2
|
65.0
|
1.0
|
CG
|
A:MET85
|
4.4
|
55.9
|
1.0
|
CAZ
|
A:EDJ301
|
4.5
|
61.2
|
1.0
|
C2
|
A:EDJ301
|
4.6
|
60.5
|
1.0
|
CD1
|
A:LEU138
|
4.6
|
59.1
|
1.0
|
CE
|
A:LYS39
|
4.6
|
82.9
|
1.0
|
CAV
|
A:EDJ301
|
4.8
|
64.6
|
1.0
|
|
Bromine binding site 2 out
of 4 in 6yid
Go back to
Bromine Binding Sites List in 6yid
Bromine binding site 2 out
of 4 in the Crystal Structure of ULK2 in Complex with Sbi-0206965
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of ULK2 in Complex with Sbi-0206965 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br301
b:76.6
occ:1.00
|
BR5
|
B:EDJ301
|
0.0
|
76.6
|
1.0
|
C5
|
B:EDJ301
|
1.9
|
58.8
|
1.0
|
C6
|
B:EDJ301
|
2.8
|
54.5
|
1.0
|
C4
|
B:EDJ301
|
2.9
|
56.3
|
1.0
|
OAU
|
B:EDJ301
|
3.1
|
50.9
|
1.0
|
CE
|
B:LYS39
|
3.8
|
70.4
|
1.0
|
SD
|
B:MET85
|
3.9
|
53.1
|
1.0
|
CB
|
B:ALA37
|
4.0
|
48.2
|
1.0
|
CB
|
B:MET85
|
4.1
|
52.3
|
1.0
|
N1
|
B:EDJ301
|
4.1
|
51.7
|
1.0
|
N3
|
B:EDJ301
|
4.1
|
53.4
|
1.0
|
O
|
B:GLU86
|
4.3
|
53.3
|
1.0
|
OAE
|
B:EDJ301
|
4.3
|
61.9
|
1.0
|
CE
|
B:MET85
|
4.4
|
59.9
|
1.0
|
CG2
|
B:VAL69
|
4.4
|
61.6
|
1.0
|
CAZ
|
B:EDJ301
|
4.4
|
51.0
|
1.0
|
NZ
|
B:LYS39
|
4.5
|
79.1
|
1.0
|
C2
|
B:EDJ301
|
4.5
|
49.8
|
1.0
|
CG
|
B:MET85
|
4.6
|
56.9
|
1.0
|
CD1
|
B:LEU138
|
4.7
|
57.1
|
1.0
|
CG
|
B:LYS39
|
4.7
|
61.9
|
1.0
|
CD
|
B:LYS39
|
4.8
|
65.6
|
1.0
|
CAV
|
B:EDJ301
|
4.9
|
60.5
|
1.0
|
CG1
|
B:VAL23
|
4.9
|
48.9
|
1.0
|
|
Bromine binding site 3 out
of 4 in 6yid
Go back to
Bromine Binding Sites List in 6yid
Bromine binding site 3 out
of 4 in the Crystal Structure of ULK2 in Complex with Sbi-0206965
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of ULK2 in Complex with Sbi-0206965 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br301
b:88.5
occ:1.00
|
BR5
|
C:EDJ301
|
0.0
|
88.5
|
1.0
|
C5
|
C:EDJ301
|
1.9
|
64.7
|
1.0
|
C6
|
C:EDJ301
|
2.8
|
63.5
|
1.0
|
C4
|
C:EDJ301
|
2.9
|
64.6
|
1.0
|
OAU
|
C:EDJ301
|
3.0
|
69.5
|
1.0
|
SD
|
C:MET85
|
3.9
|
80.7
|
1.0
|
CB
|
C:ALA37
|
3.9
|
69.4
|
1.0
|
N1
|
C:EDJ301
|
4.1
|
59.9
|
1.0
|
CB
|
C:MET85
|
4.1
|
70.4
|
1.0
|
N3
|
C:EDJ301
|
4.2
|
59.3
|
1.0
|
O
|
C:GLU86
|
4.3
|
69.6
|
1.0
|
CE
|
C:LYS39
|
4.3
|
97.9
|
1.0
|
CE
|
C:MET85
|
4.3
|
83.2
|
1.0
|
CAZ
|
C:EDJ301
|
4.4
|
72.1
|
1.0
|
CG2
|
C:VAL69
|
4.5
|
71.0
|
1.0
|
C2
|
C:EDJ301
|
4.6
|
59.3
|
1.0
|
CG
|
C:MET85
|
4.6
|
77.6
|
1.0
|
CD1
|
C:LEU138
|
4.7
|
68.8
|
1.0
|
OAE
|
C:EDJ301
|
4.8
|
83.0
|
1.0
|
NZ
|
C:LYS39
|
4.8
|
0.0
|
1.0
|
CAV
|
C:EDJ301
|
4.9
|
79.4
|
1.0
|
CG1
|
C:VAL23
|
4.9
|
71.6
|
1.0
|
|
Bromine binding site 4 out
of 4 in 6yid
Go back to
Bromine Binding Sites List in 6yid
Bromine binding site 4 out
of 4 in the Crystal Structure of ULK2 in Complex with Sbi-0206965
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of ULK2 in Complex with Sbi-0206965 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Br301
b:84.1
occ:1.00
|
BR5
|
D:EDJ301
|
0.0
|
84.1
|
1.0
|
C5
|
D:EDJ301
|
1.9
|
68.9
|
1.0
|
C6
|
D:EDJ301
|
2.8
|
67.3
|
1.0
|
C4
|
D:EDJ301
|
2.9
|
69.0
|
1.0
|
OAU
|
D:EDJ301
|
3.0
|
67.7
|
1.0
|
CB
|
D:ALA37
|
3.8
|
66.2
|
1.0
|
SD
|
D:MET85
|
4.0
|
67.2
|
1.0
|
N1
|
D:EDJ301
|
4.1
|
67.6
|
1.0
|
N3
|
D:EDJ301
|
4.1
|
67.1
|
1.0
|
CB
|
D:MET85
|
4.1
|
59.1
|
1.0
|
CE
|
D:LYS39
|
4.1
|
93.5
|
1.0
|
OAE
|
D:EDJ301
|
4.2
|
84.6
|
1.0
|
O
|
D:GLU86
|
4.3
|
67.0
|
1.0
|
CAZ
|
D:EDJ301
|
4.4
|
68.3
|
1.0
|
CE
|
D:MET85
|
4.5
|
68.7
|
1.0
|
C2
|
D:EDJ301
|
4.5
|
67.0
|
1.0
|
CG
|
D:MET85
|
4.6
|
61.6
|
1.0
|
CG2
|
D:VAL69
|
4.7
|
61.9
|
1.0
|
CG1
|
D:VAL23
|
4.8
|
73.2
|
1.0
|
CAV
|
D:EDJ301
|
4.8
|
76.1
|
1.0
|
CD1
|
D:LEU138
|
4.8
|
71.7
|
1.0
|
CG
|
D:LYS39
|
4.8
|
80.6
|
1.0
|
NZ
|
D:LYS39
|
4.9
|
99.3
|
1.0
|
|
Reference:
A.Chaikuad,
H.Ren,
N.A.Bakas,
L.J.Lambert,
N.D.P.Cosford,
S.Knapp,
Structural Genomics Consortium (Sgc).
Crystal Structure of ULK2 in Complex with Sbi-0206965 To Be Published.
Page generated: Thu Jul 11 03:09:05 2024
|