Bromine in PDB 7c7b: Crystal Structure of Human TRAP1 with SJT009

Protein crystallography data

The structure of Crystal Structure of Human TRAP1 with SJT009, PDB code: 7c7b was solved by D.Kim, S.Yang, N.G.Yoon, E.Park, S.Y.Kim, B.H.Kang, C.Lee, S.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.10 / 1.50
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 109.597, 109.597, 59.895, 90, 90, 120
R / Rfree (%) 17.3 / 20.6

Other elements in 7c7b:

The structure of Crystal Structure of Human TRAP1 with SJT009 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Human TRAP1 with SJT009 (pdb code 7c7b). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Human TRAP1 with SJT009, PDB code: 7c7b:

Bromine binding site 1 out of 1 in 7c7b

Go back to Bromine Binding Sites List in 7c7b
Bromine binding site 1 out of 1 in the Crystal Structure of Human TRAP1 with SJT009


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Human TRAP1 with SJT009 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br301

b:21.1
occ:1.00
BR A:FJX301 0.0 21.1 1.0
C04 A:FJX301 1.9 17.0 1.0
H111 A:FJX301 2.8 21.6 1.0
C05 A:FJX301 2.8 15.9 1.0
H051 A:FJX301 2.8 19.1 1.0
C03 A:FJX301 2.9 17.8 1.0
C11 A:FJX301 3.3 18.0 1.0
O17 A:FJX301 3.4 19.9 1.0
O A:HOH485 3.7 20.2 1.0
O A:HOH495 3.8 33.5 1.0
O A:ASN171 3.8 20.9 1.0
H171 A:FJX301 4.0 23.9 1.0
O A:GLY202 4.0 31.7 1.0
C A:ASN171 4.0 19.2 1.0
H112 A:FJX301 4.0 21.6 1.0
CB A:ASN171 4.1 17.9 1.0
C06 A:FJX301 4.1 18.5 1.0
CB A:PHE205 4.1 16.2 1.0
N12 A:FJX301 4.2 16.3 1.0
C02 A:FJX301 4.2 15.4 1.0
C13 A:FJX301 4.2 19.6 1.0
N A:LEU172 4.3 21.9 1.0
CA A:LEU172 4.4 22.1 1.0
CD2 A:PHE205 4.6 17.3 1.0
C01 A:FJX301 4.6 16.7 1.0
CG A:PHE205 4.7 17.6 1.0
CA A:ASN171 4.7 18.4 1.0
H021 A:FJX301 5.0 18.5 1.0
CD1 A:LEU172 5.0 24.9 1.0

Reference:

S.Yang, N.G.Yoon, D.Kim, S.Y.Kim, C.Lee, B.H.Kang, S.Kang. Design and Synthesis of TRAP1 Selective Inhibitors: Interacting with ASN171 Residue in TRAP1 to in-Crease Paralog Selectivity To Be Published.
Page generated: Sat Jul 10 09:56:20 2021

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