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Bromine in PDB 7ejc: Human RAD51 Presynaptic Complex

Other elements in 7ejc:

The structure of Human RAD51 Presynaptic Complex also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Human RAD51 Presynaptic Complex (pdb code 7ejc). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Human RAD51 Presynaptic Complex, PDB code: 7ejc:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in 7ejc

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Bromine binding site 1 out of 6 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br602

b:20.0
occ:1.00
 BR1 A:J46602 0.0 20.0 1.0
C06 A:J46602 1.8 20.0 1.0
C01 A:J46602 2.7 20.0 1.0
O01 A:J46602 2.8 20.0 1.0
C08 A:J46602 3.0 20.0 1.0
S01 A:J46602 3.1 20.0 1.0
CE A:LYS58 3.1 133.8 1.0
CG A:LYS58 3.6 133.8 1.0
N01 A:J46602 3.6 20.0 1.0
CD A:LYS58 3.8 133.8 1.0
C03 A:J46602 4.1 20.0 1.0
C07 A:J46602 4.2 20.0 1.0
CG A:PRO56 4.2 128.2 1.0
NZ A:LYS58 4.2 133.8 1.0
CB A:GLU59 4.3 133.9 1.0
N A:GLU59 4.4 133.9 1.0
O02 A:J46602 4.4 20.0 1.0
CA A:GLU59 4.4 133.9 1.0
C10 A:J46602 4.5 20.0 1.0
C04 A:J46602 4.7 20.0 1.0
C02 A:J46602 4.9 20.0 1.0
CG A:GLU59 4.9 133.9 1.0
CB A:LYS58 4.9 133.8 1.0
C A:LYS58 4.9 133.8 1.0
C05 A:J46602 5.0 20.0 1.0

Bromine binding site 2 out of 6 in 7ejc

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Bromine binding site 2 out of 6 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br602

b:20.0
occ:1.00
 BR2 A:J46602 0.0 20.0 1.0
C20 A:J46602 1.9 20.0 1.0
C19 A:J46602 2.7 20.0 1.0
C18 A:J46602 2.9 20.0 1.0
O A:LEU204 4.1 107.0 1.0
CB A:SER208 4.1 116.8 1.0
CD2 A:LEU255 4.1 110.6 1.0
C17 A:J46602 4.1 20.0 1.0
C16 A:J46602 4.1 20.0 1.0
CE A:MET251 4.2 101.0 1.0
CG A:LEU255 4.4 110.6 1.0
C A:LEU204 4.4 107.0 1.0
CD1 A:TYR205 4.5 112.5 1.0
OG A:SER208 4.5 116.8 1.0
CA A:TYR205 4.5 112.5 1.0
N A:TYR205 4.6 112.5 1.0
C12 A:J46602 4.6 20.0 1.0
CE1 A:TYR205 4.7 112.5 1.0
CB A:LEU204 4.8 107.0 1.0
CD1 A:LEU255 4.8 110.6 1.0
CB A:MET251 4.8 101.0 1.0
CG A:TYR205 5.0 112.5 1.0

Bromine binding site 3 out of 6 in 7ejc

Go back to Bromine Binding Sites List in 7ejc
Bromine binding site 3 out of 6 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br404

b:20.0
occ:1.00
 BR1 C:J46404 0.0 20.0 1.0
C06 C:J46404 1.8 20.0 1.0
C01 C:J46404 2.7 20.0 1.0
CE C:LYS58 2.8 126.9 1.0
O01 C:J46404 2.8 20.0 1.0
C08 C:J46404 3.0 20.0 1.0
S01 C:J46404 3.1 20.0 1.0
O B:ASP231 3.5 108.2 1.0
CG C:LYS58 3.5 126.9 1.0
N01 C:J46404 3.6 20.0 1.0
CD C:LYS58 3.6 126.9 1.0
NZ C:LYS58 3.9 126.9 1.0
OD1 B:ASP231 4.1 108.2 1.0
C03 C:J46404 4.1 20.0 1.0
C07 C:J46404 4.2 20.0 1.0
CG C:PRO56 4.2 122.5 1.0
O02 C:J46404 4.4 20.0 1.0
C B:ASP231 4.5 108.2 1.0
C10 C:J46404 4.5 20.0 1.0
N C:GLU59 4.6 130.2 1.0
CB C:GLU59 4.6 130.2 1.0
CA B:ASP231 4.6 108.2 1.0
C04 C:J46404 4.7 20.0 1.0
CA C:GLU59 4.8 130.2 1.0
C02 C:J46404 4.9 20.0 1.0
CG B:ASP231 4.9 108.2 1.0
CB C:LYS58 4.9 126.9 1.0
C05 C:J46404 5.0 20.0 1.0

Bromine binding site 4 out of 6 in 7ejc

Go back to Bromine Binding Sites List in 7ejc
Bromine binding site 4 out of 6 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br404

b:20.0
occ:1.00
 BR2 C:J46404 0.0 20.0 1.0
C20 C:J46404 1.9 20.0 1.0
C19 C:J46404 2.7 20.0 1.0
C18 C:J46404 2.9 20.0 1.0
CD2 C:LEU255 4.0 110.5 1.0
CE C:MET251 4.1 101.1 1.0
C17 C:J46404 4.1 20.0 1.0
C16 C:J46404 4.1 20.0 1.0
CG C:LEU255 4.3 110.5 1.0
CB C:SER208 4.4 118.0 1.0
O C:LEU204 4.4 106.1 1.0
CB C:MET251 4.5 101.1 1.0
C12 C:J46404 4.6 20.0 1.0
O C:MET251 4.6 101.1 1.0
C C:LEU204 4.7 106.1 1.0
OG C:SER208 4.8 118.0 1.0
CD1 C:TYR205 4.8 110.9 1.0
CD1 C:LEU255 4.8 110.5 1.0
CG C:MET251 4.9 101.1 1.0
CB C:LEU204 4.9 106.1 1.0
CE1 C:TYR205 4.9 110.9 1.0
N C:TYR205 5.0 110.9 1.0
CA C:TYR205 5.0 110.9 1.0

Bromine binding site 5 out of 6 in 7ejc

Go back to Bromine Binding Sites List in 7ejc
Bromine binding site 5 out of 6 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br403

b:20.0
occ:1.00
 BR1 B:J46403 0.0 20.0 1.0
C06 B:J46403 1.8 20.0 1.0
C01 B:J46403 2.7 20.0 1.0
O01 B:J46403 2.8 20.0 1.0
C08 B:J46403 3.0 20.0 1.0
S01 B:J46403 3.1 20.0 1.0
CE B:LYS58 3.1 124.7 1.0
N01 B:J46403 3.6 20.0 1.0
CG B:LYS58 3.6 124.7 1.0
CD B:LYS58 3.8 124.7 1.0
O A:ASP231 3.8 109.5 1.0
CG B:PRO56 4.1 120.3 1.0
C03 B:J46403 4.1 20.0 1.0
NZ B:LYS58 4.2 124.7 1.0
C07 B:J46403 4.2 20.0 1.0
OD1 A:ASP231 4.2 109.5 1.0
O02 B:J46403 4.4 20.0 1.0
CB B:GLU59 4.4 126.0 1.0
N B:GLU59 4.5 126.0 1.0
C10 B:J46403 4.5 20.0 1.0
CA B:GLU59 4.6 126.0 1.0
C04 B:J46403 4.7 20.0 1.0
C A:ASP231 4.8 109.5 1.0
C02 B:J46403 4.9 20.0 1.0
CA A:ASP231 4.9 109.5 1.0
CG B:GLU59 4.9 126.0 1.0
CB B:LYS58 5.0 124.7 1.0
C05 B:J46403 5.0 20.0 1.0

Bromine binding site 6 out of 6 in 7ejc

Go back to Bromine Binding Sites List in 7ejc
Bromine binding site 6 out of 6 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br403

b:20.0
occ:1.00
 BR2 B:J46403 0.0 20.0 1.0
C20 B:J46403 1.9 20.0 1.0
C19 B:J46403 2.7 20.0 1.0
C18 B:J46403 2.9 20.0 1.0
CD2 B:LEU255 4.0 109.9 1.0
C17 B:J46403 4.1 20.0 1.0
CB B:SER208 4.1 118.1 1.0
C16 B:J46403 4.1 20.0 1.0
O B:LEU204 4.2 107.1 1.0
CE B:MET251 4.2 99.5 1.0
CG B:LEU255 4.2 109.9 1.0
C B:LEU204 4.5 107.1 1.0
OG B:SER208 4.5 118.1 1.0
C12 B:J46403 4.6 20.0 1.0
CD1 B:TYR205 4.6 111.8 1.0
CA B:TYR205 4.7 111.8 1.0
N B:TYR205 4.7 111.8 1.0
CB B:MET251 4.7 99.5 1.0
CD1 B:LEU255 4.7 109.9 1.0
CB B:LEU204 4.8 107.1 1.0
CE1 B:TYR205 4.8 111.8 1.0
O B:MET251 4.9 99.5 1.0

Reference:

J.Xu, L.Zhao, S.Peng, H.Chu, R.Liang, M.Tian, P.P.Connell, G.Li, C.Chen, H.W.Wang. Mechanisms of Distinctive Mismatch Tolerance Between RAD51 and DMC1 in Homologous Recombination. Nucleic Acids Res. V. 49 13135 2021.
ISSN: ESSN 1362-4962
PubMed: 34871438
DOI: 10.1093/NAR/GKAB1141
Page generated: Mon Jul 7 11:12:19 2025

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