Bromine in PDB 7fym: Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid
Protein crystallography data
The structure of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid, PDB code: 7fym
was solved by
A.Ehler,
J.Benz,
U.Obst,
P.Mohr,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
32.26 /
1.21
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.259,
53.007,
72.387,
90,
90,
90
|
R / Rfree (%)
|
16.5 /
20.7
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid
(pdb code 7fym). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the
Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid, PDB code: 7fym:
Jump to Bromine binding site number:
1;
2;
Bromine binding site 1 out
of 2 in 7fym
Go back to
Bromine Binding Sites List in 7fym
Bromine binding site 1 out
of 2 in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:17.9
occ:0.50
|
BR11
|
A:W8N201
|
0.0
|
17.9
|
0.5
|
H34
|
A:W8N201
|
0.8
|
17.7
|
0.5
|
C15
|
A:W8N201
|
1.4
|
17.1
|
0.5
|
H32
|
A:W8N201
|
1.8
|
17.6
|
0.5
|
C10
|
A:W8N201
|
1.9
|
18.8
|
0.5
|
C07
|
A:W8N201
|
1.9
|
14.7
|
0.5
|
C07
|
A:W8N201
|
2.0
|
27.3
|
0.5
|
BR11
|
A:W8N201
|
2.1
|
38.1
|
0.5
|
H33
|
A:W8N201
|
2.2
|
17.6
|
0.5
|
H34
|
A:W8N201
|
2.8
|
17.1
|
0.5
|
C03
|
A:W8N201
|
2.8
|
16.4
|
0.5
|
H19
|
A:W8N201
|
2.9
|
16.4
|
0.5
|
C10
|
A:W8N201
|
2.9
|
15.7
|
0.5
|
C15
|
A:W8N201
|
3.1
|
16.6
|
0.5
|
HG3
|
A:PRO38
|
3.2
|
13.5
|
1.0
|
HB1
|
A:ALA36
|
3.2
|
15.9
|
1.0
|
H32
|
A:W8N201
|
3.2
|
17.2
|
0.5
|
C08
|
A:W8N201
|
3.3
|
22.6
|
0.5
|
C03
|
A:W8N201
|
3.3
|
20.9
|
0.5
|
HB3
|
A:PRO38
|
3.4
|
11.1
|
1.0
|
HB3
|
A:SER55
|
3.4
|
11.3
|
1.0
|
HB3
|
A:ALA36
|
3.5
|
17.1
|
1.0
|
HG
|
A:SER55
|
3.5
|
12.5
|
1.0
|
OG
|
A:SER55
|
3.6
|
12.8
|
1.0
|
HD3
|
A:PRO38
|
3.6
|
11.3
|
1.0
|
CB
|
A:ALA36
|
3.7
|
16.6
|
1.0
|
H23
|
A:W8N201
|
3.7
|
20.7
|
0.5
|
H19
|
A:W8N201
|
3.9
|
21.9
|
0.5
|
HB2
|
A:ALA36
|
3.9
|
17.1
|
1.0
|
CG
|
A:PRO38
|
3.9
|
14.9
|
1.0
|
CB
|
A:SER55
|
3.9
|
11.7
|
1.0
|
C4
|
A:PG4202
|
4.0
|
32.6
|
1.0
|
H33
|
A:W8N201
|
4.1
|
17.4
|
0.5
|
CB
|
A:PRO38
|
4.1
|
11.0
|
1.0
|
C01
|
A:W8N201
|
4.1
|
15.8
|
0.5
|
C08
|
A:W8N201
|
4.2
|
13.8
|
0.5
|
HG22
|
A:THR53
|
4.2
|
15.8
|
1.0
|
HB2
|
A:SER55
|
4.2
|
11.8
|
1.0
|
C04
|
A:W8N201
|
4.2
|
23.4
|
0.5
|
C01
|
A:W8N201
|
4.2
|
22.5
|
0.5
|
CD
|
A:PRO38
|
4.3
|
11.1
|
1.0
|
HB3
|
A:LYS58
|
4.4
|
13.8
|
1.0
|
C5
|
A:PG4202
|
4.4
|
35.0
|
1.0
|
HA2
|
A:GLY33
|
4.5
|
14.9
|
1.0
|
C04
|
A:W8N201
|
4.7
|
17.8
|
0.5
|
HB2
|
A:PRO38
|
4.7
|
10.8
|
1.0
|
HH22
|
A:ARG126
|
4.7
|
14.2
|
1.0
|
O3
|
A:PG4202
|
4.7
|
38.4
|
1.0
|
HG2
|
A:PRO38
|
4.8
|
14.0
|
1.0
|
HG21
|
A:THR53
|
4.8
|
15.6
|
1.0
|
O
|
A:LYS58
|
4.8
|
9.4
|
1.0
|
O
|
A:HOH330
|
4.9
|
16.1
|
1.0
|
CG2
|
A:THR53
|
4.9
|
15.9
|
1.0
|
H23
|
A:W8N201
|
4.9
|
14.9
|
0.5
|
|
Bromine binding site 2 out
of 2 in 7fym
Go back to
Bromine Binding Sites List in 7fym
Bromine binding site 2 out
of 2 in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 5-(3-Bromo-4-Methylphenyl)-3,3-Dimethyl-5- Oxopentanoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:38.1
occ:0.50
|
BR11
|
A:W8N201
|
0.0
|
38.1
|
0.5
|
C07
|
A:W8N201
|
1.9
|
27.3
|
0.5
|
BR11
|
A:W8N201
|
2.1
|
17.9
|
0.5
|
H19
|
A:W8N201
|
2.1
|
16.4
|
0.5
|
H19
|
A:W8N201
|
2.7
|
21.9
|
0.5
|
C03
|
A:W8N201
|
2.7
|
20.9
|
0.5
|
C03
|
A:W8N201
|
2.7
|
16.4
|
0.5
|
C07
|
A:W8N201
|
2.8
|
14.7
|
0.5
|
H34
|
A:W8N201
|
2.8
|
17.7
|
0.5
|
HB3
|
A:ALA36
|
2.9
|
17.1
|
1.0
|
C10
|
A:W8N201
|
2.9
|
18.8
|
0.5
|
C15
|
A:W8N201
|
3.2
|
17.1
|
0.5
|
HA2
|
A:GLY33
|
3.3
|
14.9
|
1.0
|
H32
|
A:W8N201
|
3.3
|
17.6
|
0.5
|
O
|
A:HOH330
|
3.4
|
16.1
|
1.0
|
HE2
|
A:PHE16
|
3.4
|
10.4
|
1.0
|
HB1
|
A:ALA36
|
3.6
|
15.9
|
1.0
|
HG3
|
A:PRO38
|
3.6
|
13.5
|
1.0
|
HH22
|
A:ARG126
|
3.6
|
14.2
|
1.0
|
C5
|
A:PG4202
|
3.6
|
35.0
|
1.0
|
CB
|
A:ALA36
|
3.6
|
16.6
|
1.0
|
O
|
A:GLY33
|
3.6
|
17.8
|
1.0
|
HD3
|
A:PRO38
|
3.8
|
11.3
|
1.0
|
HB2
|
A:ALA36
|
3.9
|
17.1
|
1.0
|
HZ
|
A:PHE16
|
3.9
|
11.1
|
1.0
|
C01
|
A:W8N201
|
4.0
|
15.8
|
0.5
|
C01
|
A:W8N201
|
4.0
|
22.5
|
0.5
|
HA3
|
A:GLY33
|
4.0
|
15.3
|
1.0
|
CA
|
A:GLY33
|
4.0
|
14.8
|
1.0
|
C4
|
A:PG4202
|
4.0
|
32.6
|
1.0
|
NH2
|
A:ARG126
|
4.0
|
14.7
|
1.0
|
C10
|
A:W8N201
|
4.1
|
15.7
|
0.5
|
CE2
|
A:PHE16
|
4.1
|
10.6
|
1.0
|
H33
|
A:W8N201
|
4.1
|
17.6
|
0.5
|
O06
|
A:W8N201
|
4.2
|
20.2
|
0.5
|
HH21
|
A:ARG126
|
4.2
|
14.1
|
1.0
|
C08
|
A:W8N201
|
4.2
|
22.6
|
0.5
|
C
|
A:GLY33
|
4.3
|
14.1
|
1.0
|
CZ
|
A:PHE16
|
4.4
|
11.2
|
1.0
|
O3
|
A:PG4202
|
4.4
|
38.4
|
1.0
|
CG
|
A:PRO38
|
4.4
|
14.9
|
1.0
|
CD
|
A:PRO38
|
4.5
|
11.1
|
1.0
|
C02
|
A:W8N201
|
4.6
|
17.7
|
0.5
|
C04
|
A:W8N201
|
4.6
|
23.4
|
0.5
|
O4
|
A:PG4202
|
4.6
|
30.5
|
1.0
|
H34
|
A:W8N201
|
4.7
|
17.1
|
0.5
|
H32
|
A:W8N201
|
4.7
|
17.2
|
0.5
|
HB3
|
A:PRO38
|
4.7
|
11.1
|
1.0
|
C15
|
A:W8N201
|
4.8
|
16.6
|
0.5
|
C6
|
A:PG4202
|
4.8
|
26.6
|
1.0
|
O06
|
A:W8N201
|
4.8
|
30.4
|
0.5
|
CA
|
A:ALA36
|
4.9
|
17.1
|
1.0
|
HD2
|
A:PRO38
|
4.9
|
11.2
|
1.0
|
H
|
A:ALA36
|
4.9
|
19.8
|
1.0
|
C02
|
A:W8N201
|
4.9
|
25.0
|
0.5
|
HH12
|
A:ARG126
|
4.9
|
12.2
|
1.0
|
C04
|
A:W8N201
|
5.0
|
17.8
|
0.5
|
H23
|
A:W8N201
|
5.0
|
20.7
|
0.5
|
|
Reference:
U.Obst,
C.Magnone,
B.Kuhn,
M.G.Rudolph.
Crystal Structure of A Human FABP4 Binding Site Mutated to That of FABP5 Complex To Be Published.
Page generated: Thu Jul 11 03:55:11 2024
|