Bromine in PDB 7fzw: Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid
Protein crystallography data
The structure of Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid, PDB code: 7fzw
was solved by
A.Ehler,
J.Benz,
U.Obst,
H.Richter,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.52 /
1.24
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
32.786,
53.581,
74.524,
90,
90,
90
|
R / Rfree (%)
|
14.4 /
18.3
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid
(pdb code 7fzw). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the
Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid, PDB code: 7fzw:
Jump to Bromine binding site number:
1;
2;
Bromine binding site 1 out
of 2 in 7fzw
Go back to
Bromine Binding Sites List in 7fzw
Bromine binding site 1 out
of 2 in the Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br204
b:33.2
occ:0.70
|
BR24
|
A:WI8204
|
0.0
|
33.2
|
0.7
|
C13
|
A:WI8204
|
1.8
|
29.3
|
1.0
|
BR
|
A:BR206
|
2.2
|
26.5
|
0.3
|
OG
|
A:SER55
|
2.4
|
19.8
|
1.0
|
H35
|
A:WI8204
|
2.6
|
28.9
|
1.0
|
C12
|
A:WI8204
|
2.6
|
30.1
|
1.0
|
HG
|
A:SER55
|
2.7
|
19.4
|
1.0
|
C14
|
A:WI8204
|
2.8
|
27.6
|
1.0
|
HB3
|
A:SER55
|
2.9
|
18.0
|
1.0
|
H36
|
A:WI8204
|
2.9
|
25.9
|
1.0
|
HB1
|
A:ALA36
|
3.0
|
13.6
|
1.0
|
CB
|
A:SER55
|
3.2
|
18.2
|
1.0
|
HB3
|
A:PHE57
|
3.3
|
25.0
|
0.3
|
HG3
|
A:PRO38
|
3.3
|
19.1
|
1.0
|
HB3
|
A:PHE57
|
3.4
|
25.4
|
0.7
|
HB3
|
A:ALA36
|
3.4
|
13.4
|
1.0
|
HD2
|
A:PHE57
|
3.4
|
34.7
|
0.7
|
CB
|
A:ALA36
|
3.5
|
13.7
|
1.0
|
HB2
|
A:SER55
|
3.5
|
18.1
|
1.0
|
HB2
|
A:ALA36
|
3.5
|
13.2
|
1.0
|
HB3
|
A:PRO38
|
3.7
|
15.4
|
1.0
|
H
|
A:LYS58
|
3.7
|
19.1
|
1.0
|
HD2
|
A:PHE57
|
3.8
|
35.1
|
0.3
|
C17
|
A:WI8204
|
3.9
|
25.9
|
1.0
|
O
|
A:LYS58
|
4.0
|
21.8
|
1.0
|
C15
|
A:WI8204
|
4.0
|
24.3
|
1.0
|
O
|
A:HOH396
|
4.1
|
41.2
|
1.0
|
CG
|
A:PRO38
|
4.2
|
19.2
|
1.0
|
HD3
|
A:PRO38
|
4.2
|
14.4
|
1.0
|
CB
|
A:PHE57
|
4.3
|
25.1
|
0.3
|
H
|
A:PHE57
|
4.3
|
18.0
|
1.0
|
CD2
|
A:PHE57
|
4.3
|
35.6
|
0.7
|
CB
|
A:PHE57
|
4.3
|
25.0
|
0.7
|
CB
|
A:PRO38
|
4.4
|
15.5
|
1.0
|
HB2
|
A:LYS58
|
4.4
|
28.7
|
1.0
|
C16
|
A:WI8204
|
4.4
|
23.4
|
1.0
|
N
|
A:LYS58
|
4.4
|
19.9
|
1.0
|
OG
|
A:SER53
|
4.5
|
26.3
|
1.0
|
CA
|
A:SER55
|
4.5
|
16.9
|
1.0
|
CD2
|
A:PHE57
|
4.6
|
35.9
|
0.3
|
HG
|
A:SER53
|
4.6
|
24.8
|
1.0
|
H37
|
A:WI8204
|
4.6
|
25.5
|
1.0
|
HB2
|
A:PHE57
|
4.6
|
25.1
|
0.3
|
HB3
|
A:LYS58
|
4.7
|
27.0
|
1.0
|
CD
|
A:PRO38
|
4.7
|
14.9
|
1.0
|
N
|
A:SER55
|
4.8
|
16.4
|
1.0
|
HB2
|
A:PHE57
|
4.8
|
25.1
|
0.7
|
HA
|
A:PRO38
|
4.8
|
12.6
|
1.0
|
CG
|
A:PHE57
|
4.8
|
31.0
|
0.7
|
CB
|
A:LYS58
|
4.9
|
27.9
|
1.0
|
HG2
|
A:PRO38
|
4.9
|
17.8
|
1.0
|
CG
|
A:PHE57
|
4.9
|
30.7
|
0.3
|
H
|
A:SER55
|
4.9
|
16.5
|
1.0
|
CA
|
A:ALA36
|
4.9
|
12.8
|
1.0
|
C
|
A:LYS58
|
4.9
|
21.4
|
1.0
|
HA
|
A:ALA33
|
4.9
|
13.1
|
1.0
|
|
Bromine binding site 2 out
of 2 in 7fzw
Go back to
Bromine Binding Sites List in 7fzw
Bromine binding site 2 out
of 2 in the Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of Human FABP4 in Complex with 2-[[5-Bromo-2-(3- Cyclopropyl-1,2,4-Oxadiazol-5-Yl)Phenyl]Carbamoyl]Cyclopentene-1- Carboxylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br206
b:26.5
occ:0.30
|
BR24
|
A:WI8204
|
2.2
|
33.2
|
0.7
|
OG
|
A:SER53
|
2.6
|
26.3
|
1.0
|
HB3
|
A:PRO38
|
2.8
|
15.4
|
1.0
|
HB3
|
A:SER55
|
2.9
|
18.0
|
1.0
|
HG
|
A:SER55
|
3.0
|
19.4
|
1.0
|
HG
|
A:SER53
|
3.0
|
24.8
|
1.0
|
O
|
A:HOH396
|
3.1
|
41.2
|
1.0
|
OG
|
A:SER55
|
3.2
|
19.8
|
1.0
|
O
|
A:LYS58
|
3.2
|
21.8
|
1.0
|
C13
|
A:WI8204
|
3.3
|
29.3
|
1.0
|
H36
|
A:WI8204
|
3.3
|
25.9
|
1.0
|
CB
|
A:SER55
|
3.5
|
18.2
|
1.0
|
HB3
|
A:SER53
|
3.5
|
20.9
|
1.0
|
HG3
|
A:PRO38
|
3.6
|
19.1
|
1.0
|
CB
|
A:SER53
|
3.6
|
21.5
|
1.0
|
C14
|
A:WI8204
|
3.6
|
27.6
|
1.0
|
CB
|
A:PRO38
|
3.7
|
15.5
|
1.0
|
C
|
A:SER53
|
3.8
|
17.6
|
1.0
|
O
|
A:SER53
|
3.8
|
22.3
|
1.0
|
N
|
A:SER55
|
3.9
|
16.4
|
1.0
|
C
|
A:GLU54
|
4.0
|
18.3
|
1.0
|
H
|
A:SER55
|
4.0
|
16.5
|
1.0
|
N
|
A:GLU54
|
4.0
|
18.0
|
1.0
|
HB2
|
A:PRO38
|
4.1
|
14.8
|
1.0
|
CG
|
A:PRO38
|
4.2
|
19.2
|
1.0
|
HB2
|
A:SER55
|
4.2
|
18.1
|
1.0
|
H
|
A:LYS58
|
4.2
|
19.1
|
1.0
|
CA
|
A:SER53
|
4.3
|
16.9
|
1.0
|
C12
|
A:WI8204
|
4.3
|
30.1
|
1.0
|
HA
|
A:GLU54
|
4.3
|
18.2
|
1.0
|
O
|
A:GLU54
|
4.3
|
17.1
|
1.0
|
CA
|
A:SER55
|
4.3
|
16.9
|
1.0
|
HA
|
A:PRO38
|
4.3
|
12.6
|
1.0
|
C
|
A:LYS58
|
4.3
|
21.4
|
1.0
|
CA
|
A:GLU54
|
4.3
|
18.1
|
1.0
|
H35
|
A:WI8204
|
4.4
|
28.9
|
1.0
|
H
|
A:GLU54
|
4.4
|
17.3
|
1.0
|
HB2
|
A:SER53
|
4.4
|
20.8
|
1.0
|
HB3
|
A:LYS58
|
4.4
|
27.0
|
1.0
|
HA
|
A:ASN59
|
4.5
|
20.1
|
1.0
|
HA
|
A:SER53
|
4.6
|
16.9
|
1.0
|
CA
|
A:PRO38
|
4.6
|
12.7
|
1.0
|
HB1
|
A:ALA36
|
4.7
|
13.6
|
1.0
|
HG23
|
A:THR60
|
4.7
|
28.7
|
1.0
|
HG2
|
A:PRO38
|
4.8
|
17.8
|
1.0
|
H
|
A:THR60
|
4.9
|
17.4
|
1.0
|
C15
|
A:WI8204
|
4.9
|
24.3
|
1.0
|
HB2
|
A:LYS58
|
4.9
|
28.7
|
1.0
|
HA
|
A:SER55
|
4.9
|
17.1
|
1.0
|
O
|
A:HOH347
|
4.9
|
24.0
|
1.0
|
N
|
A:LYS58
|
5.0
|
19.9
|
1.0
|
HD2
|
A:PHE57
|
5.0
|
34.7
|
0.7
|
|
Reference:
U.Obst,
C.Magnone,
B.Kuhn,
M.G.Rudolph.
Crystal Structure of A Human FABP4 Complex To Be Published.
Page generated: Thu Jul 11 03:55:14 2024
|