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Bromine in PDB 7gd1: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856), PDB code: 7gd1 was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.23 / 1.52
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.234, 53.155, 44.509, 90, 102.69, 90
R / Rfree (%) 16.2 / 20.8

Bromine Binding Sites:

The binding sites of Bromine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856) (pdb code 7gd1). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856), PDB code: 7gd1:

Bromine binding site 1 out of 1 in 7gd1

Go back to Bromine Binding Sites List in 7gd1
Bromine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-58 (Mpro-X10856) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br404

b:88.1
occ:1.00
BR A:M2X404 0.0 88.1 1.0
C4 A:M2X404 1.9 60.3 1.0
C3 A:M2X404 2.8 60.6 1.0
C5 A:M2X404 2.8 55.1 1.0
CE A:MET49 3.0 44.5 1.0
C A:ASP187 3.6 22.7 1.0
CA A:ASP187 3.7 21.5 1.0
N A:ARG188 3.8 25.4 1.0
CB A:ASP187 3.9 21.1 1.0
ND1 A:HIS41 3.9 24.2 1.0
O A:ASP187 3.9 21.6 1.0
CB A:MET165 4.1 25.1 1.0
C2 A:M2X404 4.1 53.5 1.0
SD A:MET165 4.1 34.6 1.0
C6 A:M2X404 4.2 49.2 1.0
O A:HIS164 4.4 20.0 1.0
CE1 A:HIS41 4.4 24.2 1.0
CG A:HIS41 4.5 22.9 1.0
CA A:ARG188 4.5 29.2 1.0
SD A:MET49 4.5 46.4 1.0
C A:ARG188 4.5 30.2 1.0
C1 A:M2X404 4.6 51.3 1.0
O A:ARG188 4.7 29.3 1.0
CB A:HIS41 4.7 21.6 1.0
CG A:MET165 4.8 26.6 1.0
OH A:TYR54 4.9 23.9 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Thu Jul 11 03:56:30 2024

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