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Bromine in PDB 7gyc: Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose.

Protein crystallography data

The structure of Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose., PDB code: 7gyc was solved by M.Cabry, M.J.Rodrigues, Y.V.Le Bihan, R.L.M.Van Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.12 / 1.92
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.95, 89.7, 97.11, 90, 90, 90
R / Rfree (%) 17 / 21.9

Other elements in 7gyc:

The structure of Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose. (pdb code 7gyc). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose., PDB code: 7gyc:

Bromine binding site 1 out of 1 in 7gyc

Go back to Bromine Binding Sites List in 7gyc
Bromine binding site 1 out of 1 in the Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of HSP72 in Complex with Ligand 10 at 10.26 Mgy X- Ray Dose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br403

b:34.2
occ:0.04
BR8 A:GBA403 0.0 34.2 0.0
C8 A:GBA403 1.9 33.9 1.0
N7 A:GBA403 2.8 33.8 1.0
N9 A:GBA403 2.8 32.8 1.0
O4' A:GBA403 3.2 43.3 1.0
O A:HOH684 3.2 52.0 1.0
C1' A:GBA403 3.3 38.7 1.0
NH1 A:ARG272 3.4 57.0 1.0
NH2 A:ARG272 3.5 51.0 1.0
CZ A:ARG272 3.5 68.8 1.0
O A:HOH676 3.6 46.4 1.0
C2' A:GBA403 3.6 41.0 1.0
C5' A:GBA403 3.8 52.1 1.0
CA A:GLY339 3.8 25.8 1.0
C5 A:GBA403 3.9 32.8 1.0
C4' A:GBA403 3.9 45.2 1.0
O A:HOH683 4.0 48.4 1.0
C4 A:GBA403 4.0 32.2 1.0
O A:HOH923 4.3 68.6 1.0
OD2 A:ASP366 4.3 62.4 1.0
NE A:ARG272 4.3 59.6 1.0
C3' A:GBA403 4.4 43.1 1.0
O A:HOH787 4.5 64.5 1.0
C A:GLY339 4.6 29.1 1.0
N A:GLY339 4.7 25.4 1.0
O2' A:GBA403 4.7 39.9 1.0
CG A:ASP366 4.9 49.5 1.0
CB A:ASP366 5.0 27.0 1.0

Reference:

M.J.Rodrigues, M.Cabry, G.Collie, M.Carter, C.Mcandrew, R.L.Owen, B.R.Bellenie, Y.-V.Le Bihan, R.L.M.Van Montfort. Specific Radiation Damage to Halogenated Inhibitors and Ligands in Protein-Ligand Crystal Structures J.Appl.Crystallogr. V. 57 1951 2024.
ISSN: ESSN 1600-5767
DOI: 10.1107/S1600576724010549
Page generated: Sun Dec 15 09:29:21 2024

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