Bromine in PDB 7kh5: Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
Enzymatic activity of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
All present enzymatic activity of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid:
3.2.1.17;
Protein crystallography data
The structure of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid, PDB code: 7kh5
was solved by
J.Truong,
S.Nguyen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.13 /
1.30
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.987,
77.987,
37.757,
90,
90,
90
|
R / Rfree (%)
|
19.4 /
22.4
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
(pdb code 7kh5). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the
Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid, PDB code: 7kh5:
Jump to Bromine binding site number:
1;
2;
3;
4;
Bromine binding site 1 out
of 4 in 7kh5
Go back to
Bromine Binding Sites List in 7kh5
Bromine binding site 1 out
of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:36.2
occ:0.29
|
BR06
|
A:WE4201
|
0.0
|
36.2
|
0.3
|
C05
|
A:WE4201
|
1.9
|
32.1
|
0.3
|
C07
|
A:WE4201
|
2.9
|
33.7
|
0.3
|
C04
|
A:WE4201
|
2.9
|
32.9
|
0.3
|
C02
|
A:WE4201
|
3.1
|
23.8
|
0.3
|
BR08
|
A:WE4201
|
3.3
|
43.5
|
0.3
|
O01
|
A:WE4201
|
3.5
|
21.9
|
0.3
|
O03
|
A:WE4201
|
3.8
|
29.3
|
0.3
|
ND2
|
A:ASN93
|
4.0
|
31.7
|
1.0
|
O
|
A:HOH343
|
4.2
|
39.6
|
1.0
|
C09
|
A:WE4201
|
4.2
|
29.5
|
0.3
|
C15
|
A:WE4201
|
4.2
|
29.8
|
0.3
|
C13
|
A:WE4201
|
4.7
|
33.4
|
0.3
|
CG
|
A:ASN93
|
4.9
|
29.9
|
1.0
|
|
Bromine binding site 2 out
of 4 in 7kh5
Go back to
Bromine Binding Sites List in 7kh5
Bromine binding site 2 out
of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:43.5
occ:0.29
|
BR08
|
A:WE4201
|
0.0
|
43.5
|
0.3
|
C07
|
A:WE4201
|
1.9
|
33.7
|
0.3
|
C05
|
A:WE4201
|
2.9
|
32.1
|
0.3
|
C09
|
A:WE4201
|
2.9
|
29.5
|
0.3
|
C10
|
A:WE4201
|
3.1
|
31.0
|
0.3
|
BR06
|
A:WE4201
|
3.3
|
36.2
|
0.3
|
O12
|
A:WE4201
|
3.6
|
34.8
|
0.3
|
O11
|
A:WE4201
|
3.6
|
30.4
|
0.3
|
C13
|
A:WE4201
|
4.2
|
33.4
|
0.3
|
C04
|
A:WE4201
|
4.2
|
32.9
|
0.3
|
C15
|
A:WE4201
|
4.7
|
29.8
|
0.3
|
|
Bromine binding site 3 out
of 4 in 7kh5
Go back to
Bromine Binding Sites List in 7kh5
Bromine binding site 3 out
of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:30.4
occ:0.29
|
BR14
|
A:WE4201
|
0.0
|
30.4
|
0.3
|
C13
|
A:WE4201
|
1.9
|
33.4
|
0.3
|
C09
|
A:WE4201
|
2.9
|
29.5
|
0.3
|
C15
|
A:WE4201
|
2.9
|
29.8
|
0.3
|
C10
|
A:WE4201
|
3.1
|
31.0
|
0.3
|
BR16
|
A:WE4201
|
3.4
|
25.6
|
0.3
|
O11
|
A:WE4201
|
3.5
|
30.4
|
0.3
|
O12
|
A:WE4201
|
3.6
|
34.8
|
0.3
|
O
|
A:ASN93
|
3.6
|
21.5
|
1.0
|
CB
|
A:CYS76
|
3.6
|
21.0
|
1.0
|
O
|
A:CYS76
|
3.7
|
22.2
|
1.0
|
CA
|
A:CYS76
|
3.7
|
20.7
|
1.0
|
SG
|
A:CYS76
|
3.8
|
21.0
|
1.0
|
CA
|
A:CYS94
|
3.8
|
20.0
|
1.0
|
C
|
A:ASN93
|
3.9
|
20.8
|
1.0
|
N
|
A:CYS94
|
4.0
|
19.0
|
1.0
|
O
|
A:HOH308
|
4.1
|
35.7
|
1.0
|
C
|
A:CYS76
|
4.2
|
19.1
|
1.0
|
C07
|
A:WE4201
|
4.2
|
33.7
|
0.3
|
C04
|
A:WE4201
|
4.2
|
32.9
|
0.3
|
CB
|
A:ASN93
|
4.4
|
27.4
|
1.0
|
CB
|
A:CYS94
|
4.4
|
19.0
|
1.0
|
CB
|
A:LYS97
|
4.6
|
20.4
|
1.0
|
C05
|
A:WE4201
|
4.7
|
32.1
|
0.3
|
CA
|
A:ASN93
|
4.8
|
23.1
|
1.0
|
N
|
A:CYS76
|
5.0
|
21.5
|
1.0
|
SG
|
A:CYS94
|
5.0
|
19.6
|
1.0
|
|
Bromine binding site 4 out
of 4 in 7kh5
Go back to
Bromine Binding Sites List in 7kh5
Bromine binding site 4 out
of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:25.6
occ:0.29
|
BR16
|
A:WE4201
|
0.0
|
25.6
|
0.3
|
C15
|
A:WE4201
|
1.9
|
29.8
|
0.3
|
C04
|
A:WE4201
|
2.9
|
32.9
|
0.3
|
C13
|
A:WE4201
|
2.9
|
33.4
|
0.3
|
C02
|
A:WE4201
|
3.1
|
23.8
|
0.3
|
O
|
A:ALA90
|
3.2
|
21.1
|
1.0
|
O03
|
A:WE4201
|
3.4
|
29.3
|
0.3
|
BR14
|
A:WE4201
|
3.4
|
30.4
|
0.3
|
CD1
|
A:ILE78
|
3.6
|
31.5
|
1.0
|
CG2
|
A:ILE78
|
3.6
|
31.9
|
1.0
|
O01
|
A:WE4201
|
3.7
|
21.9
|
0.3
|
N
|
A:CYS94
|
3.8
|
19.0
|
1.0
|
CB
|
A:ASN93
|
3.9
|
27.4
|
1.0
|
CA
|
A:ALA90
|
4.0
|
22.6
|
1.0
|
O
|
A:CYS76
|
4.0
|
22.2
|
1.0
|
C
|
A:ALA90
|
4.0
|
20.8
|
1.0
|
CB
|
A:CYS94
|
4.0
|
19.0
|
1.0
|
C05
|
A:WE4201
|
4.2
|
32.1
|
0.3
|
C09
|
A:WE4201
|
4.2
|
29.5
|
0.3
|
CG1
|
A:ILE78
|
4.2
|
24.9
|
1.0
|
CB
|
A:CYS76
|
4.2
|
21.0
|
1.0
|
CB
|
A:ALA90
|
4.3
|
26.1
|
1.0
|
CA
|
A:CYS94
|
4.3
|
20.0
|
1.0
|
C
|
A:ASN93
|
4.3
|
20.8
|
1.0
|
CB
|
A:ILE78
|
4.5
|
22.6
|
1.0
|
CA
|
A:ASN93
|
4.7
|
23.1
|
1.0
|
C07
|
A:WE4201
|
4.7
|
33.7
|
0.3
|
C
|
A:CYS76
|
4.9
|
19.1
|
1.0
|
|
Reference:
J.Q.Truong,
S.Nguyen,
J.B.Bruning,
K.E.Shearwin.
Structure of Lysozyme with Tetrabromoterephthalic Acid (B4C) To Be Published.
Page generated: Thu Jul 11 04:01:26 2024
|