Bromine in PDB 7kh5: Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid

Enzymatic activity of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid

All present enzymatic activity of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid, PDB code: 7kh5 was solved by J.Truong, S.Nguyen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.13 / 1.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.987, 77.987, 37.757, 90, 90, 90
R / Rfree (%) 19.4 / 22.4

Bromine Binding Sites:

The binding sites of Bromine atom in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid (pdb code 7kh5). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid, PDB code: 7kh5:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 7kh5

Go back to Bromine Binding Sites List in 7kh5
Bromine binding site 1 out of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br201

b:36.2
occ:0.29
BR06 A:WE4201 0.0 36.2 0.3
C05 A:WE4201 1.9 32.1 0.3
C07 A:WE4201 2.9 33.7 0.3
C04 A:WE4201 2.9 32.9 0.3
C02 A:WE4201 3.1 23.8 0.3
BR08 A:WE4201 3.3 43.5 0.3
O01 A:WE4201 3.5 21.9 0.3
O03 A:WE4201 3.8 29.3 0.3
ND2 A:ASN93 4.0 31.7 1.0
O A:HOH343 4.2 39.6 1.0
C09 A:WE4201 4.2 29.5 0.3
C15 A:WE4201 4.2 29.8 0.3
C13 A:WE4201 4.7 33.4 0.3
CG A:ASN93 4.9 29.9 1.0

Bromine binding site 2 out of 4 in 7kh5

Go back to Bromine Binding Sites List in 7kh5
Bromine binding site 2 out of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br201

b:43.5
occ:0.29
BR08 A:WE4201 0.0 43.5 0.3
C07 A:WE4201 1.9 33.7 0.3
C05 A:WE4201 2.9 32.1 0.3
C09 A:WE4201 2.9 29.5 0.3
C10 A:WE4201 3.1 31.0 0.3
BR06 A:WE4201 3.3 36.2 0.3
O12 A:WE4201 3.6 34.8 0.3
O11 A:WE4201 3.6 30.4 0.3
C13 A:WE4201 4.2 33.4 0.3
C04 A:WE4201 4.2 32.9 0.3
C15 A:WE4201 4.7 29.8 0.3

Bromine binding site 3 out of 4 in 7kh5

Go back to Bromine Binding Sites List in 7kh5
Bromine binding site 3 out of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br201

b:30.4
occ:0.29
BR14 A:WE4201 0.0 30.4 0.3
C13 A:WE4201 1.9 33.4 0.3
C09 A:WE4201 2.9 29.5 0.3
C15 A:WE4201 2.9 29.8 0.3
C10 A:WE4201 3.1 31.0 0.3
BR16 A:WE4201 3.4 25.6 0.3
O11 A:WE4201 3.5 30.4 0.3
O12 A:WE4201 3.6 34.8 0.3
O A:ASN93 3.6 21.5 1.0
CB A:CYS76 3.6 21.0 1.0
O A:CYS76 3.7 22.2 1.0
CA A:CYS76 3.7 20.7 1.0
SG A:CYS76 3.8 21.0 1.0
CA A:CYS94 3.8 20.0 1.0
C A:ASN93 3.9 20.8 1.0
N A:CYS94 4.0 19.0 1.0
O A:HOH308 4.1 35.7 1.0
C A:CYS76 4.2 19.1 1.0
C07 A:WE4201 4.2 33.7 0.3
C04 A:WE4201 4.2 32.9 0.3
CB A:ASN93 4.4 27.4 1.0
CB A:CYS94 4.4 19.0 1.0
CB A:LYS97 4.6 20.4 1.0
C05 A:WE4201 4.7 32.1 0.3
CA A:ASN93 4.8 23.1 1.0
N A:CYS76 5.0 21.5 1.0
SG A:CYS94 5.0 19.6 1.0

Bromine binding site 4 out of 4 in 7kh5

Go back to Bromine Binding Sites List in 7kh5
Bromine binding site 4 out of 4 in the Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Hen Egg White Lysozyme in Complex with Tetrabromoterephthalic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br201

b:25.6
occ:0.29
BR16 A:WE4201 0.0 25.6 0.3
C15 A:WE4201 1.9 29.8 0.3
C04 A:WE4201 2.9 32.9 0.3
C13 A:WE4201 2.9 33.4 0.3
C02 A:WE4201 3.1 23.8 0.3
O A:ALA90 3.2 21.1 1.0
O03 A:WE4201 3.4 29.3 0.3
BR14 A:WE4201 3.4 30.4 0.3
CD1 A:ILE78 3.6 31.5 1.0
CG2 A:ILE78 3.6 31.9 1.0
O01 A:WE4201 3.7 21.9 0.3
N A:CYS94 3.8 19.0 1.0
CB A:ASN93 3.9 27.4 1.0
CA A:ALA90 4.0 22.6 1.0
O A:CYS76 4.0 22.2 1.0
C A:ALA90 4.0 20.8 1.0
CB A:CYS94 4.0 19.0 1.0
C05 A:WE4201 4.2 32.1 0.3
C09 A:WE4201 4.2 29.5 0.3
CG1 A:ILE78 4.2 24.9 1.0
CB A:CYS76 4.2 21.0 1.0
CB A:ALA90 4.3 26.1 1.0
CA A:CYS94 4.3 20.0 1.0
C A:ASN93 4.3 20.8 1.0
CB A:ILE78 4.5 22.6 1.0
CA A:ASN93 4.7 23.1 1.0
C07 A:WE4201 4.7 33.7 0.3
C A:CYS76 4.9 19.1 1.0

Reference:

J.Q.Truong, S.Nguyen, J.B.Bruning, K.E.Shearwin. Structure of Lysozyme with Tetrabromoterephthalic Acid (B4C) To Be Published.
Page generated: Sat Jul 10 09:59:19 2021

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