Bromine in PDB 7l32: Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6

Enzymatic activity of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6

All present enzymatic activity of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6:
2.8.1.12;

Protein crystallography data

The structure of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6, PDB code: 7l32 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.25 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.68, 93.29, 65.25, 90, 90.1, 90
R / Rfree (%) 17.9 / 20.3

Bromine Binding Sites:

The binding sites of Bromine atom in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 (pdb code 7l32). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 8 binding sites of Bromine where determined in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6, PDB code: 7l32:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Bromine binding site 1 out of 8 in 7l32

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Bromine binding site 1 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br201

b:102.8
occ:0.66
 CG2 A:THR3 3.3 51.0 1.0
CD A:ARG5 3.3 45.9 1.0
NH1 A:ARG5 3.8 41.9 1.0
CG A:ARG5 4.0 46.2 1.0
NE A:ARG5 4.4 33.7 1.0
CB A:ARG5 4.5 29.4 1.0
O A:ILE4 4.6 29.6 1.0
CZ A:ARG5 4.6 39.7 1.0
CB A:THR3 4.6 39.0 1.0
N A:ILE4 4.9 30.1 1.0
C A:ILE4 5.0 34.2 1.0

Bromine binding site 2 out of 8 in 7l32

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Bromine binding site 2 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br202

b:39.0
occ:0.65
 NZ A:LYS118 2.6 36.7 1.0
CE A:LYS118 3.0 37.1 1.0
O A:HOH399 3.8 60.1 1.0
CA A:GLY35 3.8 20.9 1.0
CG1 A:VAL94 3.8 22.5 1.0
BR A:BR203 4.1 44.7 0.6
C A:GLY35 4.4 24.5 1.0
CD A:LYS118 4.5 32.6 1.0
CD1 A:ILE93 4.5 35.2 1.0
CE2 A:PHE33 4.5 20.2 1.0
CE A:MET114 4.7 20.5 1.0
N A:THR36 4.8 29.0 1.0
N A:GLY35 4.8 20.0 1.0
O A:HOH313 4.8 35.8 1.0
O A:HOH355 4.9 40.9 1.0
CB A:ILE93 4.9 26.9 1.0
O A:GLY35 4.9 23.5 1.0
CG2 A:ILE93 5.0 31.0 1.0

Bromine binding site 3 out of 8 in 7l32

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Bromine binding site 3 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br203

b:44.7
occ:0.64
 BR A:BR202 4.1 39.0 0.7
O A:HOH399 4.1 60.1 1.0
CZ A:PHE33 4.4 21.4 1.0
CE A:LYS118 4.6 37.1 1.0
CE2 A:PHE33 4.9 20.2 1.0

Bromine binding site 4 out of 8 in 7l32

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Bromine binding site 4 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br201

b:114.4
occ:0.72
 CD B:ARG38 3.7 85.5 1.0
NH1 B:ARG38 4.0 87.0 1.0
NE2 C:HIS102 4.1 54.6 1.0
O B:HOH386 4.2 51.6 1.0
O B:HOH416 4.3 59.2 1.0
CB B:ARG38 4.5 75.8 1.0
CD2 C:HIS102 4.6 57.7 1.0
CG B:ARG38 4.7 79.5 1.0
NE B:ARG38 4.8 85.1 1.0
CZ B:ARG38 4.8 87.3 1.0

Bromine binding site 5 out of 8 in 7l32

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Bromine binding site 5 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br202

b:49.3
occ:0.70
 O B:HOH363 3.2 57.1 1.0
O B:HOH390 3.3 48.3 1.0
NH1 B:ARG103 3.5 43.5 1.0
N B:ARG103 3.8 32.6 1.0
CB B:ARG103 3.8 36.0 1.0
CG B:ARG103 3.9 35.6 1.0
BR C:BR202 4.0 46.0 0.6
CD B:ARG103 4.1 33.1 1.0
CZ C:PHE33 4.3 28.9 1.0
CA B:ARG103 4.4 34.4 1.0
CE C:LYS118 4.5 47.0 1.0
CZ B:ARG103 4.6 41.7 1.0
CA B:HIS102 4.6 41.9 1.0
CB B:ALA29 4.7 30.6 1.0
O B:HOH394 4.7 42.3 1.0
C B:HIS102 4.7 33.9 1.0
NE B:ARG103 4.8 33.0 1.0
CE2 C:PHE33 4.9 27.9 1.0
NZ C:LYS118 5.0 49.2 1.0
O C:HOH315 5.0 59.0 1.0

Bromine binding site 6 out of 8 in 7l32

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Bromine binding site 6 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br203

b:41.1
occ:0.52
 NZ B:LYS118 2.6 38.7 1.0
O B:HOH407 3.0 34.9 1.0
CE B:LYS118 3.1 30.5 1.0
CA B:GLY35 3.7 25.0 1.0
CG1 B:VAL94 3.7 25.6 1.0
C B:GLY35 4.2 26.9 1.0
O B:HOH403 4.3 49.3 1.0
BR C:BR201 4.3 49.8 0.6
CD1 B:ILE93 4.4 48.4 1.0
CD B:LYS118 4.6 31.8 1.0
CE2 B:PHE33 4.6 25.8 1.0
N B:THR36 4.6 31.8 1.0
O B:HOH357 4.7 30.6 1.0
N B:GLY35 4.7 24.3 1.0
CE B:MET114 4.7 26.0 1.0
CB B:ILE93 4.8 31.7 1.0
O B:GLY35 4.8 22.6 1.0
O B:HOH323 4.8 32.0 1.0
CG2 B:ILE93 4.9 39.8 1.0

Bromine binding site 7 out of 8 in 7l32

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Bromine binding site 7 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br201

b:49.8
occ:0.62
 O B:HOH407 3.1 34.9 1.0
O B:HOH403 3.2 49.3 1.0
NH1 C:ARG103 3.6 31.4 1.0
CB C:ARG103 3.8 25.7 1.0
N C:ARG103 3.8 22.7 1.0
CG C:ARG103 3.8 30.0 1.0
CD C:ARG103 4.0 24.4 1.0
BR B:BR203 4.3 41.1 0.5
O C:HOH386 4.3 40.0 1.0
CA C:ARG103 4.4 25.8 1.0
CZ B:PHE33 4.5 23.6 1.0
CE B:LYS118 4.6 30.5 1.0
CZ C:ARG103 4.6 29.1 1.0
CA C:HIS102 4.7 31.5 1.0
C C:HIS102 4.7 25.6 1.0
NE C:ARG103 4.8 23.4 1.0
O C:HOH335 4.8 44.8 1.0
CB C:ALA29 4.9 23.6 1.0

Bromine binding site 8 out of 8 in 7l32

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Bromine binding site 8 out of 8 in the Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br202

b:46.0
occ:0.56
 O B:HOH390 2.6 48.3 1.0
NZ C:LYS118 2.6 49.2 1.0
CE C:LYS118 3.1 47.0 1.0
CA C:GLY35 3.9 28.3 1.0
CG1 C:VAL94 3.9 33.9 1.0
BR B:BR202 4.0 49.3 0.7
CE2 C:PHE33 4.3 27.9 1.0
CD C:LYS118 4.6 52.0 1.0
C C:GLY35 4.6 36.3 1.0
CD1 C:ILE93 4.6 43.1 1.0
CE C:MET114 4.7 34.9 1.0
N C:GLY35 4.8 25.5 1.0
CZ C:PHE33 4.8 28.9 1.0
CG2 C:ILE93 4.9 41.8 1.0
O B:HOH363 5.0 57.1 1.0
CB C:ILE93 5.0 39.1 1.0

Reference:

C.D.Sroge, J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Molybdopterin Biosynthesis Moae Protein From Burkholderia Ambifaria MC40-6 To Be Published.
Page generated: Sun Jan 24 08:38:00 2021

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