Bromine in PDB 7lgt: Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83

Protein crystallography data

The structure of Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83, PDB code: 7lgt was solved by S.Gras, C.Szeto, D.S.M.Chatzileontiadou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.06 / 1.97
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 57.144, 62.854, 63.01, 77.15, 77, 77.86
R / Rfree (%) 18.9 / 24.6

Other elements in 7lgt:

The structure of Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83 also contains other interesting chemical elements:

Potassium (K) 12 atoms
Sodium (Na) 4 atoms
Chlorine (Cl) 9 atoms
Zinc (Zn) 11 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83 (pdb code 7lgt). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83, PDB code: 7lgt:

Bromine binding site 1 out of 1 in 7lgt

Go back to Bromine Binding Sites List in 7lgt
Bromine binding site 1 out of 1 in the Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br105

b:32.2
occ:1.00
O B:HOH258 2.8 40.7 1.0
N B:GLY43 3.3 36.1 1.0
CB B:ALA79 3.8 27.0 1.0
O B:GLU77 3.9 24.4 1.0
N B:ASN42 3.9 22.1 1.0
CA B:GLY43 4.0 36.4 1.0
C B:TYR78 4.0 18.3 1.0
N B:ALA79 4.1 19.7 1.0
C B:GLU77 4.1 29.9 1.0
CA B:ASN42 4.2 29.4 1.0
C B:ASN42 4.2 32.6 1.0
CB B:LEU40 4.2 19.9 1.0
CA B:TYR78 4.3 22.5 1.0
N B:TYR78 4.3 26.5 1.0
O B:TYR78 4.4 21.9 1.0
CB B:GLU77 4.4 35.4 1.0
O B:LEU40 4.4 23.5 1.0
CA B:ALA79 4.6 20.8 1.0
C B:LEU40 4.6 24.9 1.0
C B:LYS41 4.6 23.2 1.0
CD1 B:LEU40 4.8 27.5 1.0
NZ B:LYS94 4.9 60.5 1.0
CA B:GLU77 5.0 26.9 1.0
CA B:LYS41 5.0 19.9 1.0

Reference:

K.E.Lineburg, E.J.Grant, S.Swaminathan, D.S.Chatzileontiadou, C.Szeto, H.Sloane, A.Panikkar, J.Raju, P.Crooks, S.Rehan, A.T.Nguyen, L.Lekieffre, M.A.Neller, Z.W.M.Tong, D.Jayasinghe, K.Y.Chew, C.A.Lobos, H.Halim, J.M.Burrows, A.Riboldi-Tunnicliffe, W.Chen, L.D'orsogna, R.Khanna, K.R.Short, C.Smith, S.Gras. CD8+ T Cells Specific For An Immunodominant Sars-Cov-2 Nucleocapsid Epitope Cross-React with Selective Seasonal Coronaviruses Immunity 2021.
ISSN: ISSN 1074-7613
DOI: 10.1016/J.IMMUNI.2021.04.006
Page generated: Sat Jul 10 09:59:15 2021

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