Bromine in PDB 7nsv: 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046
Protein crystallography data
The structure of 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046, PDB code: 7nsv
was solved by
M.Wolter,
L.V.Dijck,
P.J.Cossar,
C.Ottmann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
66.35 /
1.33
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
82.288,
112.163,
62.634,
90,
90,
90
|
R / Rfree (%)
|
20.2 /
21.3
|
Bromine Binding Sites:
The binding sites of Bromine atom in the 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046
(pdb code 7nsv). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the
14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046, PDB code: 7nsv:
Jump to Bromine binding site number:
1;
2;
3;
4;
Bromine binding site 1 out
of 4 in 7nsv
Go back to
Bromine Binding Sites List in 7nsv
Bromine binding site 1 out
of 4 in the 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br301
b:59.6
occ:0.74
|
BR1
|
A:UQN301
|
0.0
|
59.6
|
0.7
|
BR1
|
A:UQN301
|
0.2
|
59.6
|
0.3
|
C06
|
A:UQN301
|
1.9
|
44.9
|
0.3
|
C06
|
A:UQN301
|
1.9
|
45.0
|
0.7
|
C08
|
A:UQN301
|
2.8
|
48.4
|
0.3
|
C03
|
A:UQN301
|
2.9
|
40.8
|
0.3
|
C08
|
A:UQN301
|
2.9
|
48.5
|
0.7
|
C03
|
A:UQN301
|
2.9
|
40.7
|
0.7
|
C02
|
A:UQN301
|
3.1
|
34.0
|
0.7
|
C02
|
A:UQN301
|
3.2
|
35.0
|
0.3
|
O
|
A:HOH497
|
3.2
|
32.8
|
1.0
|
OG
|
A:SER45
|
3.4
|
18.3
|
1.0
|
O
|
A:HOH463
|
3.4
|
25.6
|
1.0
|
CE2
|
A:PHE119
|
3.7
|
17.3
|
1.0
|
CZ
|
A:PHE119
|
3.8
|
15.4
|
1.0
|
C09
|
A:UQN301
|
4.1
|
49.4
|
0.3
|
O
|
A:HOH530
|
4.1
|
19.0
|
1.0
|
CB
|
A:SER45
|
4.1
|
16.1
|
1.0
|
C04
|
A:UQN301
|
4.2
|
38.0
|
0.3
|
C09
|
A:UQN301
|
4.2
|
49.4
|
0.7
|
C04
|
A:UQN301
|
4.2
|
37.8
|
0.7
|
OD1
|
A:ASN42
|
4.4
|
25.9
|
1.0
|
NZ
|
A:LYS122
|
4.5
|
28.7
|
1.0
|
C05
|
A:UQN301
|
4.6
|
44.1
|
0.3
|
C05
|
A:UQN301
|
4.7
|
44.1
|
0.7
|
CD2
|
A:PHE119
|
4.7
|
16.5
|
1.0
|
CE1
|
A:PHE119
|
4.9
|
14.1
|
1.0
|
|
Bromine binding site 2 out
of 4 in 7nsv
Go back to
Bromine Binding Sites List in 7nsv
Bromine binding site 2 out
of 4 in the 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br301
b:59.6
occ:0.26
|
BR1
|
A:UQN301
|
0.0
|
59.6
|
0.3
|
BR1
|
A:UQN301
|
0.2
|
59.6
|
0.7
|
C06
|
A:UQN301
|
1.9
|
44.9
|
0.3
|
C06
|
A:UQN301
|
2.0
|
45.0
|
0.7
|
C08
|
A:UQN301
|
2.9
|
48.4
|
0.3
|
C03
|
A:UQN301
|
2.9
|
40.8
|
0.3
|
C03
|
A:UQN301
|
2.9
|
40.7
|
0.7
|
C08
|
A:UQN301
|
3.0
|
48.5
|
0.7
|
O
|
A:HOH497
|
3.1
|
32.8
|
1.0
|
C02
|
A:UQN301
|
3.1
|
34.0
|
0.7
|
C02
|
A:UQN301
|
3.1
|
35.0
|
0.3
|
OG
|
A:SER45
|
3.3
|
18.3
|
1.0
|
O
|
A:HOH463
|
3.4
|
25.6
|
1.0
|
CE2
|
A:PHE119
|
3.8
|
17.3
|
1.0
|
CZ
|
A:PHE119
|
3.9
|
15.4
|
1.0
|
O
|
A:HOH530
|
4.0
|
19.0
|
1.0
|
CB
|
A:SER45
|
4.1
|
16.1
|
1.0
|
C09
|
A:UQN301
|
4.2
|
49.4
|
0.3
|
C04
|
A:UQN301
|
4.2
|
38.0
|
0.3
|
C04
|
A:UQN301
|
4.2
|
37.8
|
0.7
|
C09
|
A:UQN301
|
4.3
|
49.4
|
0.7
|
NZ
|
A:LYS122
|
4.5
|
28.7
|
1.0
|
OD1
|
A:ASN42
|
4.5
|
25.9
|
1.0
|
C05
|
A:UQN301
|
4.7
|
44.1
|
0.3
|
C05
|
A:UQN301
|
4.8
|
44.1
|
0.7
|
CD2
|
A:PHE119
|
4.8
|
16.5
|
1.0
|
CE1
|
A:PHE119
|
5.0
|
14.1
|
1.0
|
|
Bromine binding site 3 out
of 4 in 7nsv
Go back to
Bromine Binding Sites List in 7nsv
Bromine binding site 3 out
of 4 in the 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br301
b:74.7
occ:0.74
|
BR2
|
A:UQN301
|
0.0
|
74.7
|
0.7
|
C17
|
A:UQN301
|
0.4
|
56.2
|
0.3
|
C18
|
A:UQN301
|
1.1
|
55.9
|
0.3
|
C16
|
A:UQN301
|
1.3
|
53.7
|
0.3
|
C13
|
A:UQN301
|
2.0
|
61.7
|
0.7
|
C12
|
A:UQN301
|
2.0
|
60.5
|
0.3
|
C15
|
A:UQN301
|
2.1
|
57.3
|
0.3
|
C13
|
A:UQN301
|
2.4
|
61.6
|
0.3
|
C15
|
A:UQN301
|
2.9
|
54.6
|
0.7
|
C12
|
A:UQN301
|
2.9
|
61.4
|
0.7
|
C11
|
A:UQN301
|
3.2
|
58.0
|
0.7
|
N19
|
A:UQN301
|
3.3
|
59.7
|
0.7
|
C11
|
A:UQN301
|
3.4
|
57.9
|
0.3
|
O
|
A:ASP215
|
3.4
|
20.0
|
1.0
|
CD1
|
A:ILE219
|
3.7
|
21.1
|
1.0
|
CG1
|
A:ILE219
|
3.8
|
22.3
|
1.0
|
N19
|
A:UQN301
|
4.0
|
59.8
|
0.3
|
CA
|
A:ASP215
|
4.0
|
21.3
|
1.0
|
C
|
A:ASP215
|
4.1
|
17.5
|
1.0
|
CB
|
A:ASP215
|
4.2
|
24.5
|
1.0
|
N10
|
A:UQN301
|
4.2
|
55.7
|
0.7
|
C16
|
A:UQN301
|
4.2
|
53.0
|
0.7
|
C18
|
A:UQN301
|
4.2
|
71.3
|
0.7
|
C20
|
A:UQN301
|
4.2
|
58.8
|
0.7
|
BR2
|
A:UQN301
|
4.3
|
74.7
|
0.3
|
CD2
|
A:LEU218
|
4.4
|
35.8
|
1.0
|
OD1
|
A:ASP215
|
4.4
|
27.9
|
1.0
|
N10
|
A:UQN301
|
4.5
|
55.4
|
0.3
|
CG
|
A:ASP215
|
4.6
|
31.9
|
1.0
|
CB
|
A:LEU218
|
4.6
|
21.6
|
1.0
|
CB
|
A:PRO167
|
4.7
|
16.8
|
1.0
|
C21
|
A:UQN301
|
4.7
|
55.1
|
0.7
|
CG
|
A:LEU218
|
4.7
|
33.1
|
1.0
|
C17
|
A:UQN301
|
4.7
|
60.1
|
0.7
|
CD1
|
A:LEU218
|
4.9
|
32.3
|
1.0
|
C09
|
A:UQN301
|
5.0
|
49.4
|
0.7
|
|
Bromine binding site 4 out
of 4 in 7nsv
Go back to
Bromine Binding Sites List in 7nsv
Bromine binding site 4 out
of 4 in the 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of 14-3-3 Sigma with P65 (Rela) Binding Site PS45 and Covalently Bound PC2046 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br301
b:74.7
occ:0.26
|
BR2
|
A:UQN301
|
0.0
|
74.7
|
0.3
|
C18
|
A:UQN301
|
0.3
|
71.3
|
0.7
|
C17
|
A:UQN301
|
1.1
|
60.1
|
0.7
|
C12
|
A:UQN301
|
1.6
|
61.4
|
0.7
|
C13
|
A:UQN301
|
1.9
|
61.6
|
0.3
|
C16
|
A:UQN301
|
2.2
|
53.0
|
0.7
|
C13
|
A:UQN301
|
2.5
|
61.7
|
0.7
|
C15
|
A:UQN301
|
2.7
|
54.6
|
0.7
|
C11
|
A:UQN301
|
2.8
|
58.0
|
0.7
|
C15
|
A:UQN301
|
2.9
|
57.3
|
0.3
|
C12
|
A:UQN301
|
2.9
|
60.5
|
0.3
|
C11
|
A:UQN301
|
3.3
|
57.9
|
0.3
|
C09
|
A:UQN301
|
3.4
|
49.4
|
0.7
|
N10
|
A:UQN301
|
3.4
|
55.7
|
0.7
|
C09
|
A:UQN301
|
3.5
|
49.4
|
0.3
|
N10
|
A:UQN301
|
3.6
|
55.4
|
0.3
|
C08
|
A:UQN301
|
3.6
|
48.5
|
0.7
|
C08
|
A:UQN301
|
3.7
|
48.4
|
0.3
|
N19
|
A:UQN301
|
3.9
|
59.7
|
0.7
|
C05
|
A:UQN301
|
4.1
|
44.1
|
0.3
|
CD1
|
P:ILE46
|
4.1
|
38.0
|
1.0
|
C05
|
A:UQN301
|
4.1
|
44.1
|
0.7
|
CG1
|
P:ILE46
|
4.1
|
40.8
|
1.0
|
C16
|
A:UQN301
|
4.2
|
53.7
|
0.3
|
C18
|
A:UQN301
|
4.2
|
55.9
|
0.3
|
C06
|
A:UQN301
|
4.3
|
45.0
|
0.7
|
BR2
|
A:UQN301
|
4.3
|
74.7
|
0.7
|
C06
|
A:UQN301
|
4.3
|
44.9
|
0.3
|
N19
|
A:UQN301
|
4.4
|
59.8
|
0.3
|
C21
|
A:UQN301
|
4.6
|
52.7
|
0.3
|
N
|
P:ARG49
|
4.6
|
56.5
|
1.0
|
C21
|
A:UQN301
|
4.6
|
55.1
|
0.7
|
C04
|
A:UQN301
|
4.7
|
38.0
|
0.3
|
C04
|
A:UQN301
|
4.7
|
37.8
|
0.7
|
C17
|
A:UQN301
|
4.7
|
56.2
|
0.3
|
C03
|
A:UQN301
|
4.8
|
40.8
|
0.3
|
N
|
P:GLY48
|
4.8
|
32.1
|
1.0
|
CA
|
P:GLY48
|
4.8
|
42.2
|
1.0
|
C03
|
A:UQN301
|
4.8
|
40.7
|
0.7
|
C20
|
A:UQN301
|
4.9
|
58.8
|
0.7
|
|
Reference:
P.J.Cossar,
M.Wolter,
L.Van Dijck,
D.Valenti,
L.M.Levy,
C.Ottmann,
L.Brunsveld.
Reversible Covalent Imine-Tethering For Selective Stabilization of 14-3-3 Hub Protein Interactions. J.Am.Chem.Soc. 2021.
ISSN: ESSN 1520-5126
PubMed: 34047554
DOI: 10.1021/JACS.1C03035
Page generated: Thu Jul 11 04:09:45 2024
|