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Bromine in PDB 7oxq: Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket.

Enzymatic activity of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket.

All present enzymatic activity of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket.:
2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16;

Protein crystallography data

The structure of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket., PDB code: 7oxq was solved by S.E.Martinez, A.K.Singh, K.Das, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 81.68 / 3.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 309.565, 61.9, 168.779, 90, 104.55, 90
R / Rfree (%) 26.2 / 29.6

Other elements in 7oxq:

The structure of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket. also contains other interesting chemical elements:

Cadmium (Cd) 21 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket. (pdb code 7oxq). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket., PDB code: 7oxq:

Bromine binding site 1 out of 1 in 7oxq

Go back to Bromine Binding Sites List in 7oxq
Bromine binding site 1 out of 1 in the Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br601

b:128.6
occ:1.00
BR1 C:2NU601 0.0 128.6 1.0
C5 C:2NU601 1.9 84.1 1.0
C4 C:2NU601 2.9 77.5 1.0
C6 C:2NU601 2.9 78.7 1.0
NE2 C:GLN151 3.0 111.6 1.0
H6 C:2NU601 3.1 92.8 1.0
H7 C:2NU601 3.2 94.2 1.0
OD2 C:ASP185 3.6 78.9 1.0
N2 C:2NU601 4.0 83.6 1.0
N3 C:2NU601 4.1 76.7 1.0
CD C:GLN151 4.1 105.7 1.0
CE2 C:TYR115 4.4 80.6 1.0
OE1 C:GLN151 4.4 101.5 1.0
H12 C:2NU601 4.4 72.4 1.0
CZ C:TYR115 4.6 77.6 1.0
CD2 C:TYR115 4.6 80.7 1.0
CG C:ASP185 4.7 71.0 1.0
H3 C:2NU601 4.8 84.2 1.0
CE1 C:TYR115 4.9 71.1 1.0
CG C:TYR115 4.9 77.6 1.0
OH C:TYR115 5.0 63.7 1.0

Reference:

A.K.Singh, S.E.Martinez, W.Gu, H.Nguyen, D.Schols, P.Herdewijn, S.De Jonghe, K.Das. Crystal Structure of Hiv-1 Reverse Transcriptase with A Double Stranded Dna in Complex with Fragment 048 at the Transient P-Pocket. To Be Published.
Page generated: Thu Jul 11 04:18:34 2024

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