Bromine in PDB 7qwd: Cc-TYPE2-(Ug)4
Protein crystallography data
The structure of Cc-TYPE2-(Ug)4, PDB code: 7qwd
was solved by
F.J.O.Martin,
F.Zieleniewski,
W.M.Dawson,
D.N.Woolfson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.00 /
1.35
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
34.108,
48.994,
89.376,
90,
90,
90
|
R / Rfree (%)
|
21.4 /
24.9
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Cc-TYPE2-(Ug)4
(pdb code 7qwd). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the
Cc-TYPE2-(Ug)4, PDB code: 7qwd:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
Bromine binding site 1 out
of 5 in 7qwd
Go back to
Bromine Binding Sites List in 7qwd
Bromine binding site 1 out
of 5 in the Cc-TYPE2-(Ug)4
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br19
b:35.6
occ:1.00
|
BR
|
A:4BF19
|
0.0
|
35.6
|
1.0
|
CZ
|
A:4BF19
|
1.9
|
28.3
|
1.0
|
CE1
|
A:4BF19
|
2.8
|
24.7
|
1.0
|
CE2
|
A:4BF19
|
2.9
|
25.2
|
1.0
|
CD1
|
A:4BF19
|
4.1
|
22.1
|
1.0
|
CD2
|
A:4BF19
|
4.1
|
22.9
|
1.0
|
CG
|
A:4BF19
|
4.6
|
20.5
|
1.0
|
CD
|
A:GLU23
|
4.9
|
24.9
|
1.0
|
|
Bromine binding site 2 out
of 5 in 7qwd
Go back to
Bromine Binding Sites List in 7qwd
Bromine binding site 2 out
of 5 in the Cc-TYPE2-(Ug)4
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br19
b:31.8
occ:1.00
|
BR
|
B:4BF19
|
0.0
|
31.8
|
1.0
|
CZ
|
B:4BF19
|
1.9
|
24.5
|
1.0
|
CE2
|
B:4BF19
|
2.8
|
24.5
|
1.0
|
CE1
|
B:4BF19
|
2.9
|
23.3
|
1.0
|
CD
|
C:GLU9
|
3.6
|
22.9
|
1.0
|
CG
|
C:GLU9
|
3.6
|
20.8
|
1.0
|
OE2
|
C:GLU9
|
3.8
|
23.1
|
1.0
|
OE1
|
C:GLU9
|
4.1
|
23.2
|
1.0
|
CD2
|
B:4BF19
|
4.1
|
22.6
|
1.0
|
CD1
|
B:4BF19
|
4.2
|
21.6
|
1.0
|
OE2
|
B:GLU23
|
4.3
|
34.9
|
1.0
|
O
|
B:HOH101
|
4.4
|
36.9
|
1.0
|
CD
|
B:GLU23
|
4.5
|
29.4
|
1.0
|
CG
|
B:4BF19
|
4.7
|
20.2
|
1.0
|
CG
|
B:GLU23
|
4.7
|
24.3
|
1.0
|
CB
|
C:GLU9
|
4.9
|
19.8
|
1.0
|
|
Bromine binding site 3 out
of 5 in 7qwd
Go back to
Bromine Binding Sites List in 7qwd
Bromine binding site 3 out
of 5 in the Cc-TYPE2-(Ug)4
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br19
b:48.6
occ:1.00
|
BR
|
C:4BF19
|
0.0
|
48.6
|
1.0
|
CZ
|
C:4BF19
|
1.9
|
33.9
|
1.0
|
CE1
|
C:4BF19
|
2.8
|
30.0
|
1.0
|
CE2
|
C:4BF19
|
2.8
|
32.4
|
1.0
|
OE2
|
C:GLU23
|
3.7
|
33.8
|
1.0
|
CD
|
C:GLU23
|
3.8
|
27.0
|
1.0
|
CD1
|
C:4BF19
|
4.1
|
25.6
|
1.0
|
CD2
|
C:4BF19
|
4.1
|
26.4
|
1.0
|
OE1
|
C:GLU23
|
4.2
|
31.5
|
1.0
|
CG
|
C:GLU23
|
4.2
|
24.2
|
1.0
|
CG
|
C:4BF19
|
4.6
|
23.5
|
1.0
|
|
Bromine binding site 4 out
of 5 in 7qwd
Go back to
Bromine Binding Sites List in 7qwd
Bromine binding site 4 out
of 5 in the Cc-TYPE2-(Ug)4
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Br19
b:38.8
occ:1.00
|
BR
|
D:4BF19
|
0.0
|
38.8
|
1.0
|
CZ
|
D:4BF19
|
1.9
|
28.8
|
1.0
|
CE1
|
D:4BF19
|
2.8
|
27.2
|
1.0
|
CE2
|
D:4BF19
|
2.8
|
27.5
|
1.0
|
CD1
|
D:4BF19
|
4.1
|
24.6
|
1.0
|
CD2
|
D:4BF19
|
4.1
|
24.6
|
1.0
|
CG
|
D:4BF19
|
4.6
|
22.1
|
1.0
|
OE2
|
D:GLU23
|
4.8
|
44.8
|
1.0
|
CG
|
D:GLU23
|
5.0
|
30.1
|
1.0
|
|
Bromine binding site 5 out
of 5 in 7qwd
Go back to
Bromine Binding Sites List in 7qwd
Bromine binding site 5 out
of 5 in the Cc-TYPE2-(Ug)4
 Mono view
 Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Br19
b:34.9
occ:1.00
|
BR
|
E:4BF19
|
0.0
|
34.9
|
1.0
|
CZ
|
E:4BF19
|
1.9
|
24.6
|
1.0
|
CE2
|
E:4BF19
|
2.8
|
24.5
|
1.0
|
CE1
|
E:4BF19
|
2.8
|
23.5
|
1.0
|
CD2
|
E:4BF19
|
4.1
|
22.7
|
1.0
|
CD1
|
E:4BF19
|
4.1
|
21.5
|
1.0
|
CG
|
E:GLU23
|
4.2
|
20.1
|
1.0
|
CG
|
E:4BF19
|
4.6
|
21.4
|
1.0
|
CD
|
E:GLU23
|
4.7
|
24.0
|
1.0
|
OE2
|
E:GLU23
|
4.9
|
27.3
|
1.0
|
|
Reference:
F.J.O.Martin,
F.Zieleniewski,
W.M.Dawson,
D.N.Woolfson.
Cc-TYPE2-(Ug)4 To Be Published.
Page generated: Thu Jul 11 04:28:35 2024
|