Bromine in PDB 7qwd: Cc-TYPE2-(Ug)4

Protein crystallography data

The structure of Cc-TYPE2-(Ug)4, PDB code: 7qwd was solved by F.J.O.Martin, F.Zieleniewski, W.M.Dawson, D.N.Woolfson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.108, 48.994, 89.376, 90, 90, 90
R / Rfree (%) 21.4 / 24.9

Bromine Binding Sites:

The binding sites of Bromine atom in the Cc-TYPE2-(Ug)4 (pdb code 7qwd). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Cc-TYPE2-(Ug)4, PDB code: 7qwd:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in 7qwd

Go back to Bromine Binding Sites List in 7qwd
Bromine binding site 1 out of 5 in the Cc-TYPE2-(Ug)4


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br19

b:35.6
occ:1.00
BR A:4BF19 0.0 35.6 1.0
CZ A:4BF19 1.9 28.3 1.0
CE1 A:4BF19 2.8 24.7 1.0
CE2 A:4BF19 2.9 25.2 1.0
CD1 A:4BF19 4.1 22.1 1.0
CD2 A:4BF19 4.1 22.9 1.0
CG A:4BF19 4.6 20.5 1.0
CD A:GLU23 4.9 24.9 1.0

Bromine binding site 2 out of 5 in 7qwd

Go back to Bromine Binding Sites List in 7qwd
Bromine binding site 2 out of 5 in the Cc-TYPE2-(Ug)4


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br19

b:31.8
occ:1.00
BR B:4BF19 0.0 31.8 1.0
CZ B:4BF19 1.9 24.5 1.0
CE2 B:4BF19 2.8 24.5 1.0
CE1 B:4BF19 2.9 23.3 1.0
CD C:GLU9 3.6 22.9 1.0
CG C:GLU9 3.6 20.8 1.0
OE2 C:GLU9 3.8 23.1 1.0
OE1 C:GLU9 4.1 23.2 1.0
CD2 B:4BF19 4.1 22.6 1.0
CD1 B:4BF19 4.2 21.6 1.0
OE2 B:GLU23 4.3 34.9 1.0
O B:HOH101 4.4 36.9 1.0
CD B:GLU23 4.5 29.4 1.0
CG B:4BF19 4.7 20.2 1.0
CG B:GLU23 4.7 24.3 1.0
CB C:GLU9 4.9 19.8 1.0

Bromine binding site 3 out of 5 in 7qwd

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Bromine binding site 3 out of 5 in the Cc-TYPE2-(Ug)4


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br19

b:48.6
occ:1.00
BR C:4BF19 0.0 48.6 1.0
CZ C:4BF19 1.9 33.9 1.0
CE1 C:4BF19 2.8 30.0 1.0
CE2 C:4BF19 2.8 32.4 1.0
OE2 C:GLU23 3.7 33.8 1.0
CD C:GLU23 3.8 27.0 1.0
CD1 C:4BF19 4.1 25.6 1.0
CD2 C:4BF19 4.1 26.4 1.0
OE1 C:GLU23 4.2 31.5 1.0
CG C:GLU23 4.2 24.2 1.0
CG C:4BF19 4.6 23.5 1.0

Bromine binding site 4 out of 5 in 7qwd

Go back to Bromine Binding Sites List in 7qwd
Bromine binding site 4 out of 5 in the Cc-TYPE2-(Ug)4


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br19

b:38.8
occ:1.00
BR D:4BF19 0.0 38.8 1.0
CZ D:4BF19 1.9 28.8 1.0
CE1 D:4BF19 2.8 27.2 1.0
CE2 D:4BF19 2.8 27.5 1.0
CD1 D:4BF19 4.1 24.6 1.0
CD2 D:4BF19 4.1 24.6 1.0
CG D:4BF19 4.6 22.1 1.0
OE2 D:GLU23 4.8 44.8 1.0
CG D:GLU23 5.0 30.1 1.0

Bromine binding site 5 out of 5 in 7qwd

Go back to Bromine Binding Sites List in 7qwd
Bromine binding site 5 out of 5 in the Cc-TYPE2-(Ug)4


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Cc-TYPE2-(Ug)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br19

b:34.9
occ:1.00
BR E:4BF19 0.0 34.9 1.0
CZ E:4BF19 1.9 24.6 1.0
CE2 E:4BF19 2.8 24.5 1.0
CE1 E:4BF19 2.8 23.5 1.0
CD2 E:4BF19 4.1 22.7 1.0
CD1 E:4BF19 4.1 21.5 1.0
CG E:GLU23 4.2 20.1 1.0
CG E:4BF19 4.6 21.4 1.0
CD E:GLU23 4.7 24.0 1.0
OE2 E:GLU23 4.9 27.3 1.0

Reference:

F.J.O.Martin, F.Zieleniewski, W.M.Dawson, D.N.Woolfson. Cc-TYPE2-(Ug)4 To Be Published.
Page generated: Thu Jul 11 04:28:35 2024

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