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Bromine in PDB 7zyd: Structure of Compound 6 Bound to CK2ALPHA

Enzymatic activity of Structure of Compound 6 Bound to CK2ALPHA

All present enzymatic activity of Structure of Compound 6 Bound to CK2ALPHA:
2.7.11.1;

Protein crystallography data

The structure of Structure of Compound 6 Bound to CK2ALPHA, PDB code: 7zyd was solved by P.Brear, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.23 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.72, 45.895, 63.501, 90, 111.66, 90
R / Rfree (%) 19.8 / 21.4

Other elements in 7zyd:

The structure of Structure of Compound 6 Bound to CK2ALPHA also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of Compound 6 Bound to CK2ALPHA (pdb code 7zyd). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure of Compound 6 Bound to CK2ALPHA, PDB code: 7zyd:

Bromine binding site 1 out of 1 in 7zyd

Go back to Bromine Binding Sites List in 7zyd
Bromine binding site 1 out of 1 in the Structure of Compound 6 Bound to CK2ALPHA


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of Compound 6 Bound to CK2ALPHA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br404

b:41.1
occ:0.50
BR A:KD6404 0.0 41.1 0.5
C7 A:KD6404 1.9 39.2 0.5
C6 A:KD6404 2.8 42.0 0.5
C A:KD6404 2.8 37.9 0.5
SD A:MET225 2.9 34.1 0.5
CL A:KD6404 3.2 37.7 0.5
CE A:MET225 3.5 31.7 0.5
O A:ILE133 3.9 16.4 1.0
CG A:MET137 3.9 13.7 0.5
CB A:TYR136 4.0 16.4 1.0
CA A:ILE133 4.0 14.8 1.0
CD1 A:LEU128 4.1 35.0 1.0
CG2 A:ILE133 4.1 18.2 1.0
C1 A:KD6404 4.1 40.0 0.5
C5 A:KD6404 4.1 42.7 0.5
CE A:MET137 4.2 14.9 0.5
CG A:MET225 4.3 22.9 0.5
N A:MET137 4.3 14.5 0.5
N A:MET137 4.4 14.3 0.5
CG A:MET225 4.4 26.8 0.5
C A:ILE133 4.4 17.1 1.0
CG A:MET137 4.4 14.2 0.5
SD A:MET137 4.4 17.1 0.5
CB A:ILE133 4.5 18.0 1.0
C2 A:KD6404 4.6 41.0 0.5
CG1 A:ILE133 4.6 19.8 1.0
C A:TYR136 4.7 17.0 1.0
CE A:MET225 4.8 26.1 0.5
CA A:TYR136 4.8 14.5 1.0
O A:ASP132 4.8 17.9 1.0
CA A:MET137 4.9 12.6 0.5
CA A:MET137 4.9 12.1 0.5
SD A:MET225 5.0 28.9 0.5
CB A:MET137 5.0 13.1 0.5

Reference:

P.Brear, C.De Fusco, E.L.Atkinson, J.Iegre, N.J.Francis-Newton, A.R.Venkitaraman, M.Hyvonen, D.R.Spring. A Fragment-Based Approach Leading to the Discovery of Inhibitors of CK2 Alpha with A Novel Mechanism of Action. Rsc Med Chem V. 13 1420 2022.
ISSN: ESSN 2632-8682
PubMed: 36426237
DOI: 10.1039/D2MD00161F
Page generated: Thu Jul 11 04:49:53 2024

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