Bromine in PDB 8arc: Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Protein crystallography data
The structure of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy, PDB code: 8arc
was solved by
D.Gilzer,
H.H.Niemann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.75 /
2.10
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
90.59,
34.22,
99.6,
90,
101.81,
90
|
R / Rfree (%)
|
22.9 /
28.6
|
Bromine Binding Sites:
The binding sites of Bromine atom in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
(pdb code 8arc). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the
Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy, PDB code: 8arc:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
Bromine binding site 1 out
of 6 in 8arc
Go back to
Bromine Binding Sites List in 8arc
Bromine binding site 1 out
of 6 in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:64.6
occ:0.51
|
NH2
|
A:ARG28
|
2.9
|
82.2
|
1.0
|
NH1
|
A:ARG28
|
3.0
|
55.7
|
1.0
|
N
|
D:GLN90
|
3.2
|
70.9
|
1.0
|
CZ
|
A:ARG28
|
3.4
|
53.9
|
1.0
|
CE
|
A:MET60
|
3.8
|
56.5
|
1.0
|
CH2
|
A:MLY57
|
3.8
|
73.8
|
1.0
|
CE
|
A:MLY57
|
3.8
|
57.9
|
1.0
|
CA
|
D:GLY89
|
3.9
|
84.6
|
1.0
|
CD1
|
D:LEU94
|
3.9
|
60.3
|
1.0
|
N
|
D:SER91
|
4.0
|
75.8
|
1.0
|
NZ
|
A:MLY57
|
4.1
|
73.7
|
1.0
|
C
|
D:GLY89
|
4.1
|
80.8
|
1.0
|
CA
|
D:GLN90
|
4.1
|
70.6
|
1.0
|
CB
|
D:GLN90
|
4.2
|
76.1
|
1.0
|
C
|
D:GLN90
|
4.5
|
77.1
|
1.0
|
CD
|
A:MLY57
|
4.6
|
54.9
|
1.0
|
CG
|
D:GLN90
|
4.6
|
83.1
|
1.0
|
CE
|
C:MET1
|
4.6
|
105.9
|
1.0
|
OG
|
D:SER91
|
4.7
|
63.5
|
1.0
|
NE
|
A:ARG28
|
4.7
|
59.9
|
1.0
|
CB
|
D:SER91
|
4.8
|
68.6
|
1.0
|
CG
|
C:MET1
|
4.8
|
69.5
|
1.0
|
SD
|
A:MET60
|
4.8
|
62.2
|
1.0
|
O
|
D:GLU88
|
4.9
|
85.9
|
1.0
|
SD
|
C:MET1
|
5.0
|
73.5
|
1.0
|
CG
|
A:MLY57
|
5.0
|
59.3
|
1.0
|
|
Bromine binding site 2 out
of 6 in 8arc
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Bromine Binding Sites List in 8arc
Bromine binding site 2 out
of 6 in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br202
b:68.1
occ:0.47
|
CB
|
A:MET1
|
2.9
|
79.8
|
1.0
|
N
|
A:MET1
|
3.2
|
67.1
|
1.0
|
CA
|
C:MLY57
|
3.5
|
38.7
|
1.0
|
CA
|
A:MET1
|
3.5
|
73.7
|
1.0
|
OE2
|
C:GLU89
|
3.6
|
99.5
|
1.0
|
C
|
C:MLY57
|
3.6
|
50.3
|
1.0
|
CB
|
C:SER59
|
3.8
|
63.5
|
1.0
|
N
|
C:SER59
|
3.8
|
52.9
|
1.0
|
O
|
A:MET1
|
3.8
|
75.9
|
1.0
|
CD
|
C:MLY57
|
3.8
|
68.7
|
1.0
|
CB
|
C:MLY57
|
3.9
|
47.9
|
1.0
|
N
|
C:GLY58
|
4.0
|
54.8
|
1.0
|
N
|
C:MET60
|
4.0
|
47.2
|
1.0
|
C
|
A:MET1
|
4.0
|
80.7
|
1.0
|
CG
|
A:MET1
|
4.1
|
80.2
|
1.0
|
O
|
C:MLY57
|
4.1
|
48.6
|
1.0
|
CA
|
C:SER59
|
4.2
|
56.5
|
1.0
|
OG
|
C:SER59
|
4.3
|
71.2
|
1.0
|
C
|
A:GLY0
|
4.4
|
89.0
|
1.0
|
CG
|
C:MET60
|
4.4
|
61.7
|
1.0
|
O
|
C:GLN56
|
4.5
|
76.9
|
1.0
|
CG
|
C:MLY57
|
4.5
|
48.8
|
1.0
|
CD
|
C:GLU89
|
4.6
|
96.6
|
1.0
|
C
|
C:SER59
|
4.6
|
50.9
|
1.0
|
CB
|
C:MET60
|
4.7
|
53.5
|
1.0
|
C
|
C:GLY58
|
4.7
|
45.6
|
1.0
|
N
|
C:MLY57
|
4.7
|
57.6
|
1.0
|
CA
|
A:GLY0
|
4.7
|
97.0
|
1.0
|
CA
|
C:GLY58
|
4.9
|
54.2
|
1.0
|
CA
|
C:MET60
|
5.0
|
46.5
|
1.0
|
|
Bromine binding site 3 out
of 6 in 8arc
Go back to
Bromine Binding Sites List in 8arc
Bromine binding site 3 out
of 6 in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br203
b:69.7
occ:0.43
|
CB
|
C:MET1
|
3.2
|
75.9
|
1.0
|
OE2
|
A:GLU89
|
3.2
|
87.0
|
1.0
|
N
|
C:MET1
|
3.3
|
82.1
|
1.0
|
CA
|
A:MLY57
|
3.5
|
56.5
|
1.0
|
N
|
A:SER59
|
3.5
|
50.8
|
1.0
|
C
|
A:MLY57
|
3.5
|
50.4
|
1.0
|
CB
|
A:SER59
|
3.6
|
55.0
|
1.0
|
CA
|
C:MET1
|
3.7
|
62.1
|
1.0
|
N
|
A:GLY58
|
3.7
|
48.9
|
1.0
|
O
|
C:MET1
|
3.9
|
66.3
|
1.0
|
CB
|
A:MLY57
|
4.0
|
56.9
|
1.0
|
OG
|
A:SER59
|
4.0
|
65.3
|
1.0
|
CD
|
A:MLY57
|
4.1
|
54.9
|
1.0
|
O
|
A:MLY57
|
4.1
|
44.1
|
1.0
|
N
|
A:MET60
|
4.1
|
41.7
|
1.0
|
CA
|
A:SER59
|
4.1
|
43.5
|
1.0
|
C
|
C:MET1
|
4.1
|
73.0
|
1.0
|
CD
|
A:GLU89
|
4.3
|
87.8
|
1.0
|
O
|
A:GLN56
|
4.3
|
52.8
|
1.0
|
C
|
C:GLY0
|
4.4
|
90.2
|
1.0
|
CG
|
C:MET1
|
4.4
|
69.5
|
1.0
|
C
|
A:GLY58
|
4.5
|
55.0
|
1.0
|
CA
|
C:GLY0
|
4.6
|
96.2
|
1.0
|
CE
|
A:MET60
|
4.6
|
56.5
|
1.0
|
CA
|
A:GLY58
|
4.6
|
48.7
|
1.0
|
C
|
A:SER59
|
4.7
|
40.9
|
1.0
|
N
|
A:MLY57
|
4.7
|
59.0
|
1.0
|
CG
|
A:MLY57
|
4.7
|
59.3
|
1.0
|
OE1
|
A:GLU89
|
4.8
|
95.4
|
1.0
|
CG
|
A:MET60
|
4.9
|
53.5
|
1.0
|
C
|
A:GLN56
|
5.0
|
49.1
|
1.0
|
|
Bromine binding site 4 out
of 6 in 8arc
Go back to
Bromine Binding Sites List in 8arc
Bromine binding site 4 out
of 6 in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br204
b:73.7
occ:0.43
|
CH2
|
A:MLY6
|
3.3
|
80.3
|
1.0
|
CE
|
A:MLY6
|
3.3
|
90.9
|
1.0
|
OG
|
A:SER4
|
3.4
|
62.6
|
1.0
|
NZ
|
A:MLY6
|
3.8
|
87.5
|
1.0
|
CG
|
A:GLN7
|
4.0
|
66.9
|
1.0
|
CB
|
A:MLY6
|
4.0
|
61.3
|
1.0
|
NE2
|
A:GLN7
|
4.0
|
56.1
|
1.0
|
CA
|
B:ALA78
|
4.1
|
65.7
|
1.0
|
O
|
B:GLN77
|
4.2
|
86.7
|
1.0
|
N
|
B:ALA78
|
4.4
|
68.6
|
1.0
|
CD
|
A:GLN7
|
4.4
|
57.7
|
1.0
|
C
|
B:GLN77
|
4.4
|
72.8
|
1.0
|
CB
|
B:ALA78
|
4.5
|
61.7
|
1.0
|
CD
|
A:MLY6
|
4.5
|
91.9
|
1.0
|
CB
|
A:SER4
|
4.5
|
57.7
|
1.0
|
N
|
A:GLN7
|
4.7
|
53.7
|
1.0
|
CG
|
A:MLY6
|
4.8
|
85.3
|
1.0
|
CB
|
B:GLN77
|
5.0
|
92.0
|
1.0
|
CA
|
A:MLY6
|
5.0
|
72.6
|
1.0
|
|
Bromine binding site 5 out
of 6 in 8arc
Go back to
Bromine Binding Sites List in 8arc
Bromine binding site 5 out
of 6 in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br201
b:64.3
occ:0.55
|
NH2
|
C:ARG28
|
2.7
|
85.0
|
1.0
|
NH1
|
C:ARG28
|
3.0
|
58.2
|
1.0
|
N
|
B:GLN90
|
3.2
|
74.0
|
1.0
|
CZ
|
C:ARG28
|
3.3
|
68.3
|
1.0
|
N
|
B:SER91
|
3.8
|
70.9
|
1.0
|
CE
|
C:MLY57
|
3.9
|
69.3
|
1.0
|
CD1
|
B:LEU94
|
4.0
|
61.2
|
1.0
|
CH2
|
C:MLY57
|
4.0
|
75.8
|
1.0
|
CA
|
B:GLY89
|
4.0
|
73.5
|
1.0
|
CA
|
B:GLN90
|
4.0
|
77.0
|
1.0
|
CB
|
B:GLN90
|
4.1
|
81.6
|
1.0
|
C
|
B:GLY89
|
4.1
|
78.5
|
1.0
|
NZ
|
C:MLY57
|
4.2
|
83.8
|
1.0
|
C
|
B:GLN90
|
4.4
|
74.7
|
1.0
|
CE
|
A:MET1
|
4.5
|
97.6
|
1.0
|
OG
|
B:SER91
|
4.5
|
74.0
|
1.0
|
CB
|
B:SER91
|
4.5
|
67.0
|
1.0
|
SD
|
C:MET60
|
4.6
|
54.6
|
1.0
|
CD
|
C:MLY57
|
4.6
|
68.7
|
1.0
|
CG
|
B:GLN90
|
4.6
|
85.7
|
1.0
|
NE
|
C:ARG28
|
4.6
|
62.9
|
1.0
|
CA
|
B:SER91
|
4.8
|
69.7
|
1.0
|
CG
|
A:MET1
|
4.9
|
80.2
|
1.0
|
SD
|
A:MET1
|
4.9
|
72.1
|
1.0
|
CG
|
C:MLY57
|
4.9
|
48.8
|
1.0
|
|
Bromine binding site 6 out
of 6 in 8arc
Go back to
Bromine Binding Sites List in 8arc
Bromine binding site 6 out
of 6 in the Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Br202
b:66.8
occ:0.41
|
OG
|
C:SER4
|
3.3
|
60.6
|
1.0
|
CB
|
C:MLY6
|
3.7
|
65.9
|
1.0
|
CD
|
C:MLY6
|
3.9
|
71.2
|
1.0
|
NE2
|
C:GLN7
|
3.9
|
57.7
|
1.0
|
CG
|
C:GLN7
|
4.0
|
59.3
|
1.0
|
CA
|
D:ALA78
|
4.2
|
74.9
|
1.0
|
O
|
D:GLN77
|
4.2
|
80.1
|
1.0
|
CD
|
C:GLN7
|
4.3
|
64.5
|
1.0
|
CG
|
C:MLY6
|
4.3
|
78.0
|
1.0
|
CH2
|
C:MLY6
|
4.4
|
88.2
|
1.0
|
CB
|
C:SER4
|
4.4
|
63.1
|
1.0
|
N
|
D:ALA78
|
4.5
|
76.3
|
1.0
|
C
|
D:GLN77
|
4.6
|
79.4
|
1.0
|
CB
|
D:ALA78
|
4.6
|
72.0
|
1.0
|
N
|
C:GLN7
|
4.6
|
62.9
|
1.0
|
CA
|
C:MLY6
|
4.9
|
67.8
|
1.0
|
CE
|
C:MLY6
|
5.0
|
90.9
|
1.0
|
|
Reference:
D.Gilzer,
J.L.Kowal,
F.Flotmann,
H.H.Niemann.
Heterologous Complex of Aeromonas Hydrophila Type III Secretion Substrate Ascx with Photorhabdus Luminescens Subsp. Laumondii Lscy To Be Published.
Page generated: Thu Jul 11 04:52:17 2024
|