Bromine in PDB 8d87: Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density

The structure of Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density also contains other interesting chemical elements:

Holmium

(Ho)

4 atoms

The binding sites of Bromine atom in the Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density (pdb code 8d87). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density, PDB code: 8d87:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in the Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density within 5.0Å range: probe atom residue distance (Å) B Occ A:Br401 b:95.1 occ:1.00 CA A:PRO191 3.3 51.4 1.0 CB A:PRO191 3.5 15.4 1.0 CG A:PRO191 3.8 15.4 1.0 N A:PRO191 4.2 50.9 1.0 CE1 A:PHE189 4.3 39.0 1.0 CG A:GLU45 4.3 64.2 1.0 C A:PRO191 4.4 52.6 1.0 N A:TYR192 4.4 88.9 1.0 NZ A:LYS123 4.6 45.9 1.0 CD A:GLU45 4.7 64.5 1.0 CD A:PRO191 4.7 15.9 1.0 NZ A:LYS176 4.7 48.7 1.0 OE2 A:GLU45 4.8 65.1 1.0 CE A:LYS123 4.8 44.9 1.0 CE A:LYS176 4.8 48.2 1.0 C A:PRO190 4.9 23.6 1.0 CD1 A:PHE189 4.9 40.3 1.0 O A:PHE189 5.0 70.3 1.0 O A:PRO190 5.0 23.2 1.0

Bromine binding site 2 out of 3 in the Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density within 5.0Å range: probe atom residue distance (Å) B Occ B:Br402 b:77.7 occ:1.00 NZ B:LYS123 3.9 85.9 1.0 CE B:LYS123 4.0 83.8 1.0 CA B:PRO191 4.2 50.9 1.0 CE B:LYS176 4.2 63.6 1.0 NZ B:LYS176 4.3 63.2 1.0 CE1 B:PHE189 4.3 35.4 1.0 CB B:PRO191 4.3 20.7 1.0 CG B:PRO191 4.3 20.1 1.0 CD B:LYS176 4.5 63.1 1.0 CB C:ASP188 4.6 19.6 1.0 CG B:GLU45 4.6 65.0 1.0 CZ B:PHE189 4.8 35.6 1.0 CD B:GLU45 4.8 65.8 1.0 CD B:LYS123 4.8 82.6 1.0 N C:ASP188 4.8 32.6 1.0 N B:PRO191 4.9 49.1 1.0 OE2 B:GLU45 5.0 65.9 1.0

Bromine binding site 3 out of 3 in the Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Fitted Crystal Structure of the Homotrimer of Fusion Glycoprotein E1 From Sfv Into Subtomogram Averaged Chikv E1 Glycoprotein Density within 5.0Å range: probe atom residue distance (Å) B Occ C:Br401 b:84.0 occ:1.00 CA C:PRO191 3.9 16.6 1.0 CB C:PRO191 4.1 22.5 1.0 CE1 C:PHE189 4.1 31.4 1.0 CG C:PRO191 4.1 22.8 1.0 NZ C:LYS123 4.2 59.0 1.0 NZ C:LYS176 4.2 36.7 1.0 CE C:LYS176 4.3 36.5 1.0 CE C:LYS123 4.3 55.9 1.0 CG C:GLU45 4.5 84.3 1.0 N C:PRO191 4.6 16.9 1.0 CB A:ASP188 4.7 39.7 1.0 CD C:LYS176 4.7 36.1 1.0 CZ C:PHE189 4.7 31.7 1.0 CD C:GLU45 4.8 85.9 1.0 CD1 C:PHE189 4.8 31.6 1.0 O C:PHE189 4.9 62.5 1.0 C C:PRO191 4.9 19.2 1.0 OE2 C:GLU45 5.0 87.3 1.0 CD C:PRO191 5.0 23.0 1.0

V.Mangala Prasad, J.S.Blijleven, J.M.Smit, K.K.Lee. Visualization of Conformational Changes and Membrane Remodeling Leading to Genome Delivery By Viral Class-II Fusion Machinery. Nat Commun V. 13 4772 2022.
ISSN: ESSN 2041-1723
PubMed: 35970990
DOI: 10.1038/S41467-022-32431-9