Bromine in PDB 8fhc: Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium

The structure of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium, PDB code: 8fhc was solved by R.Arenas, D.K.Wilson, W.S.Mak, J.B.Siegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.44 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.296, 85.711, 112.558, 90, 90, 90
R / Rfree (%)	19.5 / 23.6

The structure of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Bromine atom in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium (pdb code 8fhc). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium, PDB code: 8fhc:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Br303 b:44.2 occ:1.00 O A:HOH445 3.0 32.5 1.0 O A:HOH435 3.1 25.2 1.0 NH1 A:ARG106 3.1 24.6 1.0 NH2 A:ARG106 3.2 23.6 1.0 CE1 A:PHE173 3.6 26.7 1.0 CZ A:ARG106 3.6 23.3 1.0 CZ A:PHE173 3.7 26.8 1.0 CB A:ARG183 4.0 21.1 1.0 CD1 A:TYR111 4.2 27.9 1.0 CE1 A:TYR111 4.2 26.5 1.0 O A:ASP179 4.2 27.2 1.0 CG A:ARG183 4.3 21.2 1.0 CD A:ARG183 4.5 22.8 1.0 O A:HOH461 4.6 39.7 1.0 CD1 A:PHE173 4.9 26.6 1.0 NE A:ARG106 4.9 24.0 1.0 C A:ASP179 4.9 27.8 1.0 CE2 A:PHE173 5.0 26.9 1.0

Bromine binding site 2 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Br304 b:52.6 occ:1.00 O A:HOH441 3.4 26.3 1.0 CD2 A:LEU50 3.8 24.7 1.0 O A:ASN49 3.9 22.0 1.0 CB A:ASN49 3.9 28.4 1.0 C A:ASN49 4.0 22.1 1.0 N A:LEU50 4.1 20.9 1.0 CD A:ARG53 4.2 47.7 1.0 CD1 A:ILE116 4.3 18.6 1.0 CA A:LEU50 4.3 20.3 1.0 CG A:LEU50 4.4 22.3 1.0 CE2 A:TYR54 4.4 22.4 1.0 CB A:ARG53 4.5 34.0 1.0 NH2 A:ARG53 4.6 67.4 1.0 CA A:ASN49 4.6 23.3 1.0 NH1 A:ARG102 4.7 35.3 1.0 NH2 A:ARG102 4.8 36.0 1.0 CG A:ARG53 5.0 40.9 1.0 O A:HOH464 5.0 38.9 1.0 CB A:LEU50 5.0 21.0 1.0

Bromine binding site 3 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range:

Bromine binding site 4 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Br306 b:58.3 occ:1.00 NH1 A:ARG192 3.7 34.4 1.0 NH2 A:ARG192 3.7 35.1 1.0 CG A:GLU193 4.0 40.2 1.0 CB A:SER197 4.0 24.7 1.0 N A:SER197 4.0 25.3 1.0 CA A:SER197 4.1 26.4 1.0 CZ A:ARG192 4.2 34.2 1.0 CA A:GLU193 4.3 27.2 1.0 CB A:GLU196 4.3 28.1 1.0 O A:GLU193 4.4 25.9 1.0 C A:GLU196 4.4 26.0 1.0 CB A:GLU193 4.6 31.0 1.0 C A:GLU193 4.8 25.5 1.0 OE2 A:GLU193 4.8 62.0 1.0 O A:GLU196 4.8 27.2 1.0 CD A:GLU193 4.8 48.7 1.0 CA A:GLU196 4.9 26.3 1.0 OG A:SER197 5.0 21.8 1.0

Bromine binding site 5 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Br307 b:60.0 occ:1.00 O A:HOH416 3.3 31.6 1.0 NH1 A:ARG203 3.3 27.8 1.0 N A:PHE202 3.5 25.6 1.0 O A:PHE202 4.0 21.3 1.0 CA A:GLU201 4.2 30.7 1.0 CB A:PHE202 4.2 21.7 1.0 CD1 A:LEU213 4.3 36.8 1.0 CA A:PHE202 4.3 22.7 1.0 CB A:GLU201 4.3 32.0 1.0 C A:GLU201 4.4 28.7 1.0 CZ A:ARG203 4.6 27.8 1.0 C A:PHE202 4.6 21.8 1.0 CG2 A:THR31 4.9 24.2 1.0

Bromine binding site 6 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Br308 b:31.7 occ:1.00 NH2 A:ARG69 3.3 23.1 1.0 NH1 B:ARG69 3.3 28.3 1.0 CD A:ARG69 3.8 20.7 1.0 CD B:ARG69 3.9 22.9 1.0 CB A:ARG69 4.0 19.5 1.0 CB B:ARG69 4.1 19.8 1.0 CG A:ARG69 4.4 20.1 1.0 CZ A:ARG69 4.4 23.0 1.0 CZ B:ARG69 4.4 26.4 1.0 CG B:ARG69 4.5 22.7 1.0 NE A:ARG69 4.6 20.6 1.0 NE B:ARG69 4.7 21.6 1.0 O A:ARG69 4.8 19.3 1.0 CD1 A:LEU73 4.8 31.6 1.0 CD2 A:LEU73 4.9 32.4 1.0 O B:ARG69 4.9 16.2 1.0 CA A:ARG69 5.0 19.6 1.0 C A:ARG69 5.0 18.7 1.0

Bromine binding site 7 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Br304 b:54.1 occ:1.00 O B:HOH432 3.1 28.5 1.0 NH2 B:ARG203 3.5 25.5 1.0 N B:PHE202 3.6 24.0 1.0 O B:PHE202 4.1 25.1 1.0 CD1 B:LEU213 4.1 38.6 1.0 CA B:GLU201 4.2 29.7 1.0 CB B:PHE202 4.3 25.2 1.0 CB B:GLU201 4.3 34.4 1.0 CA B:PHE202 4.4 24.7 1.0 C B:GLU201 4.4 27.7 1.0 CZ B:ARG203 4.6 25.8 1.0 C B:PHE202 4.7 23.4 1.0 O B:HOH503 4.8 24.4 1.0 CG2 B:THR31 4.9 25.3 1.0 NH1 B:ARG203 4.9 28.0 1.0 CD2 B:LEU213 5.0 43.2 1.0

Bromine binding site 8 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Br305 b:44.4 occ:1.00 O B:HOH440 3.0 30.9 1.0 NH1 B:ARG106 3.1 22.0 1.0 O B:HOH408 3.2 29.1 1.0 NH2 B:ARG106 3.3 23.8 1.0 CZ B:ARG106 3.6 23.9 1.0 CE1 B:PHE173 3.6 24.9 1.0 CZ B:PHE173 3.8 24.7 1.0 CB B:ARG183 4.0 22.9 1.0 CD1 B:TYR111 4.0 23.4 1.0 CE1 B:TYR111 4.1 22.4 1.0 CG B:ARG183 4.3 22.9 1.0 CD B:ARG183 4.5 24.1 1.0 O B:ASP179 4.5 25.9 1.0 CD1 B:PHE173 4.9 25.4 1.0 NE B:ARG106 5.0 23.7 1.0 OD2 B:ASP175 5.0 26.7 1.0

Bromine binding site 9 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Br306 b:48.4 occ:1.00 O B:HOH507 3.1 30.3 1.0 CB B:LYS156 4.1 21.4 1.0 NE B:ARG160 4.2 30.9 1.0 NH2 B:ARG160 4.3 33.4 1.0 CD B:LYS156 4.4 21.5 1.0 O B:HOH508 4.5 35.1 1.0 CE B:LYS156 4.6 21.4 1.0 CZ B:ARG160 4.7 31.4 1.0 CG B:LYS156 4.8 22.1 1.0 NZ B:LYS156 5.0 23.2 1.0

Bromine binding site 10 out of 12 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Br307 b:63.2 occ:1.00 NH2 B:ARG192 3.5 45.7 1.0 NH1 B:ARG192 3.9 41.3 1.0 N B:SER197 3.9 29.6 1.0 CG B:GLU193 4.0 44.2 1.0 CB B:SER197 4.1 26.7 1.0 CB B:GLU196 4.1 30.0 1.0 CA B:SER197 4.1 29.1 1.0 CZ B:ARG192 4.2 43.0 1.0 C B:GLU196 4.2 29.0 1.0 CA B:GLU193 4.3 32.2 1.0 O B:GLU193 4.3 27.9 1.0 CD B:GLU193 4.6 48.3 1.0 CB B:GLU193 4.7 37.5 1.0 O B:GLU196 4.7 29.3 1.0 CA B:GLU196 4.7 28.6 1.0 OE2 B:GLU193 4.8 52.0 1.0 C B:GLU193 4.8 29.6 1.0

R.Arenas, D.K.Wilson, W.S.Mak, J.B.Siegel. Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium To Be Published.