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Bromine in PDB 8g0c: Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)

Enzymatic activity of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)

All present enzymatic activity of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model):
7.1.2.2;

Other elements in 8g0c:

The structure of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) (pdb code 8g0c). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 7 binding sites of Bromine where determined in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model), PDB code: 8g0c:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7;

Bromine binding site 1 out of 7 in 8g0c

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Bromine binding site 1 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
7:Br601

b:31.7
occ:1.00
 BR3 7:YGR601 0.0 31.7 1.0
C38 7:YGR601 1.9 31.7 1.0
C37 7:YGR601 2.9 31.7 1.0
C40 7:YGR601 2.9 31.7 1.0
C33 5:YGR602 3.6 33.8 1.0
CA 6:ALA66 4.0 29.3 1.0
C41 7:YGR601 4.2 31.7 1.0
O32 5:YGR602 4.2 33.8 1.0
C36 7:YGR601 4.2 31.7 1.0
O 6:ALA66 4.7 29.3 1.0
C42 7:YGR601 4.7 31.7 1.0
C 6:ALA66 4.8 29.3 1.0

Bromine binding site 2 out of 7 in 8g0c

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Bromine binding site 2 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
9:Br601

b:33.8
occ:1.00
 BR3 9:YGR601 0.0 33.8 1.0
C38 9:YGR601 1.9 33.8 1.0
C37 9:YGR601 2.9 33.8 1.0
C40 9:YGR601 2.9 33.8 1.0
CA 9:ALA66 3.7 29.7 1.0
C41 9:YGR601 4.2 33.8 1.0
C36 9:YGR601 4.2 33.8 1.0
O a:TRP218 4.5 37.4 1.0
O 9:ALA66 4.6 29.7 1.0
N 9:ALA66 4.6 29.7 1.0
C 9:ALA66 4.7 29.7 1.0
CA a:TRP218 4.7 37.4 1.0
CA a:PHE221 4.7 36.6 1.0
C42 9:YGR601 4.7 33.8 1.0
O 9:GLU65 4.9 29.3 1.0
C a:PHE221 4.9 36.6 1.0
O a:VAL217 5.0 37.6 1.0

Bromine binding site 3 out of 7 in 8g0c

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Bromine binding site 3 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Br601

b:33.0
occ:1.00
 BR3 2:YGR601 0.0 33.0 1.0
C38 2:YGR601 1.9 33.0 1.0
C37 2:YGR601 2.9 33.0 1.0
C40 2:YGR601 2.9 33.0 1.0
C33 9:YGR601 3.4 33.8 1.0
CA 1:ALA66 3.6 30.1 1.0
O32 9:YGR601 3.9 33.8 1.0
C41 2:YGR601 4.2 33.0 1.0
C36 2:YGR601 4.2 33.0 1.0
N 1:ALA66 4.5 30.1 1.0
C 1:ALA66 4.6 30.1 1.0
O 1:ALA66 4.7 30.1 1.0
C42 2:YGR601 4.7 33.0 1.0
C31 9:YGR601 5.0 33.8 1.0

Bromine binding site 4 out of 7 in 8g0c

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Bromine binding site 4 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Br601

b:33.0
occ:1.00
 BR3 3:YGR601 0.0 33.0 1.0
C38 3:YGR601 1.9 33.0 1.0
C37 3:YGR601 2.9 33.0 1.0
C40 3:YGR601 2.9 33.0 1.0
C33 2:YGR601 3.5 33.0 1.0
CA 2:ALA66 3.9 29.9 1.0
C41 3:YGR601 4.2 33.0 1.0
C36 3:YGR601 4.2 33.0 1.0
C42 3:YGR601 4.7 33.0 1.0
O32 2:YGR601 4.8 33.0 1.0
C 2:ALA66 4.9 29.9 1.0
O 2:ALA66 4.9 29.9 1.0
N 2:ALA66 4.9 29.9 1.0

Bromine binding site 5 out of 7 in 8g0c

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Bromine binding site 5 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Br602

b:33.8
occ:1.00
 BR3 3:YGR602 0.0 33.8 1.0
C38 3:YGR602 1.9 33.8 1.0
C37 3:YGR602 2.9 33.8 1.0
C40 3:YGR602 2.9 33.8 1.0
C29 3:YGR601 3.4 33.0 1.0
CA 3:ALA66 3.7 30.4 1.0
C41 3:YGR602 4.2 33.8 1.0
C36 3:YGR602 4.2 33.8 1.0
N 3:ALA66 4.6 30.4 1.0
O28 3:YGR601 4.7 33.0 1.0
C42 3:YGR602 4.7 33.8 1.0
C 3:ALA66 4.8 30.4 1.0
O 3:ALA66 4.9 30.4 1.0

Bromine binding site 6 out of 7 in 8g0c

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Bromine binding site 6 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Br601

b:33.4
occ:1.00
 BR3 5:YGR601 0.0 33.4 1.0
C38 5:YGR601 1.9 33.4 1.0
C37 5:YGR601 2.9 33.4 1.0
C40 5:YGR601 2.9 33.4 1.0
C33 3:YGR602 3.6 33.8 1.0
CA 4:ALA66 4.1 30.6 1.0
O32 3:YGR602 4.2 33.8 1.0
C41 5:YGR601 4.2 33.4 1.0
C36 5:YGR601 4.2 33.4 1.0
O 4:ALA66 4.7 30.6 1.0
C42 5:YGR601 4.7 33.4 1.0
C 4:ALA66 4.8 30.6 1.0

Bromine binding site 7 out of 7 in 8g0c

Go back to Bromine Binding Sites List in 8g0c
Bromine binding site 7 out of 7 in the Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Cryo-Em Structure of Tbaj-876-Bound Mycobacterium Smegmatis Atp Synthase Rotational State 1 (Backbone Model) within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Br602

b:33.8
occ:1.00
 BR3 5:YGR602 0.0 33.8 1.0
C38 5:YGR602 1.9 33.8 1.0
C37 5:YGR602 2.9 33.8 1.0
C40 5:YGR602 2.9 33.8 1.0
CA 5:ALA66 3.7 30.4 1.0
C41 5:YGR602 4.2 33.8 1.0
C36 5:YGR602 4.2 33.8 1.0
O28 5:YGR601 4.2 33.4 1.0
O 5:ALA66 4.6 30.4 1.0
C 5:ALA66 4.6 30.4 1.0
N 5:ALA66 4.7 30.4 1.0
C42 5:YGR602 4.7 33.8 1.0
C29 5:YGR601 5.0 33.4 1.0

Reference:

G.M.Courbon, J.L.Rubinstein. Structural Basis For Inhibition of Mycobacterial Atp Synthase By Squaramides and Second Generation Diarylquinolines To Be Published.
Page generated: Thu Jul 11 05:09:31 2024

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