Bromine in PDB 8gn1: Crystal Structure of Dbbq-Bound Photosystem II Complex
Enzymatic activity of Crystal Structure of Dbbq-Bound Photosystem II Complex
All present enzymatic activity of Crystal Structure of Dbbq-Bound Photosystem II Complex:
1.10.3.9;
Protein crystallography data
The structure of Crystal Structure of Dbbq-Bound Photosystem II Complex, PDB code: 8gn1
was solved by
S.Kamada,
Y.Nakajima,
J.-R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.02 /
2.10
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
122.185,
228.462,
286.626,
90,
90,
90
|
|
R / Rfree (%)
|
15.7 /
19.1
|
Other elements in 8gn1:
The structure of Crystal Structure of Dbbq-Bound Photosystem II Complex also contains other interesting chemical elements:
Bromine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Bromine atom in the Crystal Structure of Dbbq-Bound Photosystem II Complex
(pdb code 8gn1). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the
Crystal Structure of Dbbq-Bound Photosystem II Complex, PDB code: 8gn1:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Bromine binding site 1 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 1 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br418
b:105.1
occ:0.55
|
BR
|
A:K2I418
|
0.0
|
105.1
|
0.6
|
|
C4
|
A:K2I418
|
1.9
|
98.6
|
0.6
|
|
C3
|
A:K2I418
|
2.8
|
102.1
|
0.6
|
|
C5
|
A:K2I418
|
2.9
|
94.9
|
0.6
|
|
C3
|
A:K2I418
|
2.9
|
97.1
|
0.5
|
|
O1
|
A:K2I418
|
3.1
|
94.1
|
0.6
|
|
BR
|
A:K2I418
|
3.3
|
112.4
|
0.5
|
|
C4
|
A:K2I418
|
3.6
|
100.0
|
0.5
|
|
CD1
|
A:LEU271
|
3.9
|
56.7
|
1.0
|
|
C2
|
A:K2I418
|
4.0
|
93.0
|
0.5
|
|
C2
|
A:K2I418
|
4.2
|
100.9
|
0.6
|
|
C8
|
A:PL9417
|
4.2
|
96.6
|
1.0
|
|
O
|
A:K2I418
|
4.2
|
90.3
|
0.5
|
|
CG
|
A:MET214
|
4.2
|
63.2
|
1.0
|
|
C
|
A:K2I418
|
4.2
|
94.0
|
0.6
|
|
CD1
|
A:PHE211
|
4.4
|
50.5
|
1.0
|
|
CB
|
A:MET214
|
4.6
|
48.5
|
1.0
|
|
CD2
|
A:PHE265
|
4.6
|
65.4
|
1.0
|
|
CD2
|
A:LEU275
|
4.7
|
39.8
|
1.0
|
|
C1
|
A:K2I418
|
4.7
|
96.1
|
0.6
|
|
CE2
|
A:PHE265
|
4.8
|
63.5
|
1.0
|
|
CE2
|
A:PHE274
|
4.9
|
56.6
|
1.0
|
|
CD2
|
A:PHE274
|
4.9
|
48.0
|
1.0
|
|
CB
|
A:PHE211
|
5.0
|
43.2
|
1.0
|
|
CG
|
A:PHE211
|
5.0
|
44.7
|
1.0
|
|
Bromine binding site 2 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 2 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br418
b:112.4
occ:0.45
|
BR
|
A:K2I418
|
0.0
|
112.4
|
0.5
|
|
C3
|
A:K2I418
|
1.2
|
102.1
|
0.6
|
|
C4
|
A:K2I418
|
1.9
|
100.0
|
0.5
|
|
C2
|
A:K2I418
|
2.0
|
100.9
|
0.6
|
|
O
|
A:K2I418
|
2.2
|
99.8
|
0.6
|
|
C4
|
A:K2I418
|
2.4
|
98.6
|
0.6
|
|
C3
|
A:K2I418
|
2.8
|
97.1
|
0.5
|
|
C5
|
A:K2I418
|
2.9
|
98.3
|
0.5
|
|
O1
|
A:K2I418
|
3.1
|
100.9
|
0.5
|
|
CD2
|
A:PHE255
|
3.2
|
71.6
|
1.0
|
|
CE2
|
A:PHE255
|
3.3
|
78.0
|
1.0
|
|
BR
|
A:K2I418
|
3.3
|
105.1
|
0.6
|
|
C1
|
A:K2I418
|
3.4
|
96.1
|
0.6
|
|
N
|
A:PHE265
|
3.5
|
64.7
|
1.0
|
|
CD2
|
A:PHE265
|
3.5
|
65.4
|
1.0
|
|
C5
|
A:K2I418
|
3.6
|
94.9
|
0.6
|
|
OG
|
A:SER264
|
3.9
|
60.1
|
1.0
|
|
CA
|
A:SER264
|
4.0
|
66.3
|
1.0
|
|
C
|
A:K2I418
|
4.0
|
94.0
|
0.6
|
|
C8
|
A:PL9417
|
4.1
|
96.6
|
1.0
|
|
C2
|
A:K2I418
|
4.1
|
93.0
|
0.5
|
|
CB
|
A:PHE265
|
4.2
|
71.6
|
1.0
|
|
C
|
A:K2I418
|
4.2
|
95.2
|
0.5
|
|
C
|
A:SER264
|
4.2
|
67.2
|
1.0
|
|
CG
|
A:PHE265
|
4.3
|
69.2
|
1.0
|
|
CG
|
A:PHE255
|
4.4
|
69.0
|
1.0
|
|
CA
|
A:PHE265
|
4.4
|
68.8
|
1.0
|
|
CE2
|
A:PHE265
|
4.4
|
63.5
|
1.0
|
|
CB
|
A:SER264
|
4.4
|
62.1
|
1.0
|
|
CZ
|
A:PHE255
|
4.4
|
77.1
|
1.0
|
|
O
|
A:ALA263
|
4.6
|
75.3
|
1.0
|
|
O1
|
A:K2I418
|
4.7
|
94.1
|
0.6
|
|
C1
|
A:K2I418
|
4.7
|
91.2
|
0.5
|
|
CD1
|
A:LEU271
|
4.7
|
56.7
|
1.0
|
|
CD1
|
A:LEU218
|
4.8
|
45.3
|
1.0
|
|
O
|
A:PHE265
|
4.9
|
70.5
|
1.0
|
|
BR1
|
A:K2I418
|
4.9
|
95.5
|
0.6
|
|
Bromine binding site 3 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 3 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br418
b:95.5
occ:0.55
|
BR1
|
A:K2I418
|
0.0
|
95.5
|
0.6
|
|
C
|
A:K2I418
|
0.8
|
95.2
|
0.5
|
|
C1
|
A:K2I418
|
1.9
|
96.1
|
0.6
|
|
C5
|
A:K2I418
|
1.9
|
98.3
|
0.5
|
|
C1
|
A:K2I418
|
2.0
|
91.2
|
0.5
|
|
O1
|
A:K2I418
|
2.4
|
100.9
|
0.5
|
|
C
|
A:K2I418
|
2.9
|
94.0
|
0.6
|
|
C2
|
A:K2I418
|
2.9
|
100.9
|
0.6
|
|
BR1
|
A:K2I418
|
2.9
|
74.2
|
0.5
|
|
O
|
A:K2I418
|
3.1
|
99.8
|
0.6
|
|
C4
|
A:K2I418
|
3.3
|
100.0
|
0.5
|
|
C2
|
A:K2I418
|
3.3
|
93.0
|
0.5
|
|
O
|
A:PHE265
|
3.7
|
70.5
|
1.0
|
|
C3
|
A:K2I418
|
3.7
|
97.1
|
0.5
|
|
CB
|
A:ALA251
|
3.7
|
55.1
|
1.0
|
|
N
|
A:HIS252
|
3.8
|
54.0
|
1.0
|
|
C
|
A:ALA251
|
4.0
|
62.7
|
1.0
|
|
CG1
|
A:ILE248
|
4.0
|
70.4
|
1.0
|
|
CA
|
A:HIS252
|
4.1
|
57.6
|
1.0
|
|
C5
|
A:K2I418
|
4.1
|
94.9
|
0.6
|
|
C3
|
A:K2I418
|
4.2
|
102.1
|
0.6
|
|
O
|
A:K2I418
|
4.3
|
90.3
|
0.5
|
|
O
|
A:ALA251
|
4.3
|
54.5
|
1.0
|
|
CB
|
A:HIS252
|
4.3
|
59.5
|
1.0
|
|
O
|
A:ILE248
|
4.4
|
59.3
|
1.0
|
|
CA
|
A:ALA251
|
4.5
|
62.0
|
1.0
|
|
CD1
|
A:ILE248
|
4.6
|
60.1
|
1.0
|
|
CD1
|
A:LEU218
|
4.6
|
45.3
|
1.0
|
|
CD2
|
A:LEU271
|
4.7
|
57.2
|
1.0
|
|
C4
|
A:K2I418
|
4.7
|
98.6
|
0.6
|
|
OG
|
A:SER264
|
4.8
|
60.1
|
1.0
|
|
CB
|
A:LEU218
|
4.8
|
48.3
|
1.0
|
|
C
|
A:PHE265
|
4.8
|
67.3
|
1.0
|
|
BR
|
A:K2I418
|
4.9
|
112.4
|
0.5
|
|
Bromine binding site 4 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 4 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br418
b:74.2
occ:0.45
|
BR1
|
A:K2I418
|
0.0
|
74.2
|
0.5
|
|
C1
|
A:K2I418
|
1.9
|
91.2
|
0.5
|
|
C
|
A:K2I418
|
2.8
|
94.0
|
0.6
|
|
C
|
A:K2I418
|
2.9
|
95.2
|
0.5
|
|
C2
|
A:K2I418
|
2.9
|
93.0
|
0.5
|
|
BR1
|
A:K2I418
|
2.9
|
95.5
|
0.6
|
|
O
|
A:K2I418
|
3.1
|
90.3
|
0.5
|
|
C1
|
A:K2I418
|
3.3
|
96.1
|
0.6
|
|
CG2
|
A:VAL219
|
3.7
|
51.2
|
1.0
|
|
CB
|
A:LEU218
|
3.9
|
48.3
|
1.0
|
|
CE2
|
A:TYR246
|
3.9
|
58.5
|
1.0
|
|
CD2
|
A:LEU271
|
3.9
|
57.2
|
1.0
|
|
ND1
|
A:HIS215
|
4.0
|
48.6
|
1.0
|
|
C5
|
A:K2I418
|
4.0
|
94.9
|
0.6
|
|
CB
|
A:ALA251
|
4.0
|
55.1
|
1.0
|
|
CE1
|
A:HIS215
|
4.1
|
48.1
|
1.0
|
|
C5
|
A:K2I418
|
4.1
|
98.3
|
0.5
|
|
C3
|
A:K2I418
|
4.2
|
97.1
|
0.5
|
|
N
|
A:VAL219
|
4.2
|
50.2
|
1.0
|
|
O1
|
A:K2I418
|
4.3
|
94.1
|
0.6
|
|
OH
|
A:TYR246
|
4.3
|
76.0
|
1.0
|
|
CG1
|
A:ILE248
|
4.3
|
70.4
|
1.0
|
|
C
|
A:LEU218
|
4.4
|
51.0
|
1.0
|
|
CZ
|
A:TYR246
|
4.5
|
70.0
|
1.0
|
|
CA
|
A:VAL219
|
4.6
|
54.8
|
1.0
|
|
C4
|
A:K2I418
|
4.7
|
100.0
|
0.5
|
|
CD1
|
A:ILE248
|
4.7
|
60.1
|
1.0
|
|
CD2
|
A:TYR246
|
4.8
|
57.0
|
1.0
|
|
C2
|
A:K2I418
|
4.8
|
100.9
|
0.6
|
|
CB
|
A:VAL219
|
4.8
|
53.7
|
1.0
|
|
CA
|
A:LEU218
|
4.8
|
48.3
|
1.0
|
|
CD1
|
A:LEU218
|
4.9
|
45.3
|
1.0
|
|
O
|
A:HIS215
|
4.9
|
45.5
|
1.0
|
|
O
|
A:LEU218
|
4.9
|
46.2
|
1.0
|
|
CG
|
A:LEU218
|
5.0
|
55.0
|
1.0
|
|
Bromine binding site 5 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 5 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br419
b:52.8
occ:0.65
|
BR
|
A:K2I419
|
0.0
|
52.8
|
0.7
|
|
C4
|
A:K2I419
|
1.9
|
47.0
|
0.7
|
|
C3
|
A:K2I419
|
2.9
|
53.4
|
0.7
|
|
C5
|
A:K2I419
|
2.9
|
52.0
|
0.7
|
|
O1
|
A:K2I419
|
3.0
|
52.6
|
0.7
|
|
O
|
A:LEU200
|
3.2
|
44.1
|
1.0
|
|
N
|
A:GLY204
|
3.6
|
40.7
|
1.0
|
|
CA
|
A:GLY282
|
3.7
|
43.3
|
1.0
|
|
CB
|
A:ALA203
|
3.8
|
43.1
|
1.0
|
|
CA
|
A:GLY204
|
3.9
|
41.1
|
1.0
|
|
C
|
A:ALA203
|
4.0
|
41.1
|
1.0
|
|
C
|
A:LEU200
|
4.1
|
45.0
|
1.0
|
|
CZ2
|
A:TRP278
|
4.1
|
45.9
|
1.0
|
|
C2
|
A:K2I419
|
4.1
|
52.6
|
0.7
|
|
CE2
|
A:TRP278
|
4.2
|
45.2
|
1.0
|
|
CD2
|
A:LEU200
|
4.2
|
42.2
|
1.0
|
|
C
|
A:K2I419
|
4.2
|
50.9
|
0.7
|
|
N
|
A:GLY282
|
4.2
|
39.5
|
1.0
|
|
CA
|
A:LEU200
|
4.3
|
44.4
|
1.0
|
|
NE1
|
A:TRP278
|
4.3
|
43.2
|
1.0
|
|
CB
|
A:LEU200
|
4.4
|
42.9
|
1.0
|
|
O
|
A:TRP278
|
4.4
|
44.4
|
1.0
|
|
CA
|
A:ALA203
|
4.5
|
44.6
|
1.0
|
|
O
|
A:ALA203
|
4.5
|
38.6
|
1.0
|
|
CH2
|
A:TRP278
|
4.7
|
48.9
|
1.0
|
|
C1
|
A:K2I419
|
4.7
|
58.6
|
0.7
|
|
CD2
|
A:TRP278
|
4.7
|
47.7
|
1.0
|
|
CG
|
A:LEU200
|
4.9
|
47.8
|
1.0
|
|
CD1
|
A:TRP278
|
5.0
|
43.5
|
1.0
|
|
Bromine binding site 6 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 6 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br419
b:64.9
occ:0.65
|
BR1
|
A:K2I419
|
0.0
|
64.9
|
0.7
|
|
C1
|
A:K2I419
|
1.9
|
58.6
|
0.7
|
|
C2
|
A:K2I419
|
2.9
|
52.6
|
0.7
|
|
C
|
A:K2I419
|
2.9
|
50.9
|
0.7
|
|
O
|
A:K2I419
|
2.9
|
43.8
|
0.7
|
|
C22
|
D:LHG411
|
3.5
|
75.3
|
1.0
|
|
C33
|
C:UNL501
|
3.8
|
119.6
|
1.0
|
|
C19
|
D:LHG411
|
4.0
|
75.3
|
1.0
|
|
C18
|
D:LHG411
|
4.1
|
80.7
|
1.0
|
|
C34
|
C:UNL501
|
4.1
|
125.5
|
1.0
|
|
C5
|
A:K2I419
|
4.2
|
52.0
|
0.7
|
|
C3
|
A:K2I419
|
4.2
|
53.4
|
0.7
|
|
C20
|
D:LHG411
|
4.2
|
72.7
|
1.0
|
|
C32
|
C:UNL501
|
4.2
|
113.1
|
1.0
|
|
C21
|
D:LHG411
|
4.4
|
72.9
|
1.0
|
|
CZ3
|
A:TRP278
|
4.6
|
54.9
|
1.0
|
|
C4
|
A:K2I419
|
4.7
|
47.0
|
0.7
|
|
CE3
|
A:TRP278
|
4.7
|
49.4
|
1.0
|
|
C31
|
C:UNL501
|
4.8
|
106.7
|
1.0
|
|
C15
|
A:SQD411
|
4.9
|
98.0
|
1.0
|
|
Bromine binding site 7 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 7 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Br2118
b:114.3
occ:0.55
|
BR
|
a:K2I2118
|
0.0
|
114.3
|
0.6
|
|
C4
|
a:K2I2118
|
1.9
|
108.6
|
0.6
|
|
BR
|
a:K2I2118
|
2.1
|
112.7
|
0.5
|
|
C3
|
a:K2I2118
|
2.6
|
105.6
|
0.5
|
|
C4
|
a:K2I2118
|
2.8
|
107.4
|
0.5
|
|
C3
|
a:K2I2118
|
2.9
|
108.4
|
0.6
|
|
C5
|
a:K2I2118
|
2.9
|
104.7
|
0.6
|
|
O1
|
a:K2I2118
|
3.1
|
103.6
|
0.6
|
|
C2
|
a:K2I2118
|
3.9
|
103.2
|
0.5
|
|
CG
|
a:MET214
|
3.9
|
62.2
|
1.0
|
|
CD1
|
a:LEU271
|
4.1
|
57.8
|
1.0
|
|
C2
|
a:K2I2118
|
4.2
|
107.0
|
0.6
|
|
C
|
a:K2I2118
|
4.2
|
105.2
|
0.6
|
|
C5
|
a:K2I2118
|
4.2
|
106.8
|
0.5
|
|
CB
|
a:MET214
|
4.3
|
47.1
|
1.0
|
|
CD1
|
a:PHE211
|
4.4
|
52.4
|
1.0
|
|
O
|
a:K2I2118
|
4.4
|
101.6
|
0.5
|
|
C8
|
x:PL9801
|
4.6
|
104.5
|
1.0
|
|
C1
|
a:K2I2118
|
4.7
|
106.6
|
0.6
|
|
CD2
|
a:LEU275
|
4.7
|
44.1
|
1.0
|
|
N
|
a:HIS215
|
4.7
|
45.5
|
1.0
|
|
O
|
a:PHE211
|
4.8
|
40.4
|
1.0
|
|
O1
|
a:K2I2118
|
4.9
|
107.0
|
0.5
|
|
CB
|
a:PHE211
|
4.9
|
41.5
|
1.0
|
|
CD1
|
a:LEU218
|
5.0
|
59.8
|
1.0
|
|
Bromine binding site 8 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 8 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Br2118
b:112.7
occ:0.45
|
BR
|
a:K2I2118
|
0.0
|
112.7
|
0.5
|
|
C3
|
a:K2I2118
|
1.4
|
108.4
|
0.6
|
|
C4
|
a:K2I2118
|
1.8
|
108.6
|
0.6
|
|
C4
|
a:K2I2118
|
1.9
|
107.4
|
0.5
|
|
BR
|
a:K2I2118
|
2.1
|
114.3
|
0.6
|
|
C2
|
a:K2I2118
|
2.7
|
107.0
|
0.6
|
|
C3
|
a:K2I2118
|
2.8
|
105.6
|
0.5
|
|
C5
|
a:K2I2118
|
3.0
|
106.8
|
0.5
|
|
O1
|
a:K2I2118
|
3.2
|
107.0
|
0.5
|
|
C5
|
a:K2I2118
|
3.2
|
104.7
|
0.6
|
|
O
|
a:K2I2118
|
3.4
|
106.4
|
0.6
|
|
CE2
|
a:PHE255
|
3.6
|
80.4
|
1.0
|
|
CD2
|
a:PHE265
|
3.7
|
79.5
|
1.0
|
|
C8
|
x:PL9801
|
3.7
|
104.5
|
1.0
|
|
C1
|
a:K2I2118
|
3.8
|
106.6
|
0.6
|
|
C
|
a:K2I2118
|
4.0
|
105.2
|
0.6
|
|
O1
|
a:K2I2118
|
4.1
|
103.6
|
0.6
|
|
CD2
|
a:PHE255
|
4.1
|
76.5
|
1.0
|
|
C2
|
a:K2I2118
|
4.1
|
103.2
|
0.5
|
|
CZ
|
a:PHE255
|
4.2
|
72.5
|
1.0
|
|
CD1
|
a:LEU271
|
4.2
|
57.8
|
1.0
|
|
CE2
|
a:PHE265
|
4.2
|
74.6
|
1.0
|
|
C
|
a:K2I2118
|
4.2
|
106.7
|
0.5
|
|
C1
|
a:K2I2118
|
4.7
|
101.6
|
0.5
|
|
N
|
a:PHE265
|
4.7
|
87.7
|
1.0
|
|
CG
|
a:PHE265
|
4.8
|
80.9
|
1.0
|
|
CB
|
a:PHE265
|
4.9
|
82.3
|
1.0
|
|
C9
|
x:PL9801
|
4.9
|
110.6
|
1.0
|
|
CD1
|
a:LEU218
|
5.0
|
59.8
|
1.0
|
|
Bromine binding site 9 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 9 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Br2118
b:111.9
occ:0.55
|
BR1
|
a:K2I2118
|
0.0
|
111.9
|
0.6
|
|
C
|
a:K2I2118
|
1.5
|
106.7
|
0.5
|
|
C1
|
a:K2I2118
|
1.9
|
106.6
|
0.6
|
|
C1
|
a:K2I2118
|
2.2
|
101.6
|
0.5
|
|
C5
|
a:K2I2118
|
2.6
|
106.8
|
0.5
|
|
BR1
|
a:K2I2118
|
2.7
|
82.5
|
0.5
|
|
C
|
a:K2I2118
|
2.9
|
105.2
|
0.6
|
|
C2
|
a:K2I2118
|
2.9
|
107.0
|
0.6
|
|
O1
|
a:K2I2118
|
3.1
|
107.0
|
0.5
|
|
O
|
a:K2I2118
|
3.1
|
106.4
|
0.6
|
|
O
|
a:PHE265
|
3.4
|
91.1
|
1.0
|
|
C2
|
a:K2I2118
|
3.7
|
103.2
|
0.5
|
|
N
|
a:HIS252
|
3.8
|
74.3
|
1.0
|
|
C4
|
a:K2I2118
|
3.9
|
107.4
|
0.5
|
|
CA
|
a:HIS252
|
4.0
|
70.8
|
1.0
|
|
CB
|
a:ALA251
|
4.1
|
53.7
|
1.0
|
|
C
|
a:ALA251
|
4.1
|
67.2
|
1.0
|
|
C5
|
a:K2I2118
|
4.1
|
104.7
|
0.6
|
|
C3
|
a:K2I2118
|
4.2
|
108.4
|
0.6
|
|
OG
|
a:SER264
|
4.2
|
100.5
|
1.0
|
|
CB
|
a:HIS252
|
4.3
|
80.3
|
1.0
|
|
C3
|
a:K2I2118
|
4.3
|
105.6
|
0.5
|
|
CG1
|
a:ILE248
|
4.3
|
73.7
|
1.0
|
|
O
|
a:ALA251
|
4.4
|
62.0
|
1.0
|
|
CD1
|
a:LEU218
|
4.4
|
59.8
|
1.0
|
|
O
|
a:K2I2118
|
4.6
|
101.6
|
0.5
|
|
O
|
a:ILE248
|
4.6
|
68.9
|
1.0
|
|
C
|
a:PHE265
|
4.6
|
92.7
|
1.0
|
|
CD2
|
a:LEU271
|
4.7
|
55.9
|
1.0
|
|
C4
|
a:K2I2118
|
4.7
|
108.6
|
0.6
|
|
CA
|
a:ALA251
|
4.8
|
62.7
|
1.0
|
|
CD1
|
a:ILE248
|
4.9
|
79.2
|
1.0
|
|
Bromine binding site 10 out
of 12 in 8gn1
Go back to
Bromine Binding Sites List in 8gn1
Bromine binding site 10 out
of 12 in the Crystal Structure of Dbbq-Bound Photosystem II Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Bromine with other atoms in the Br binding
site number 10 of Crystal Structure of Dbbq-Bound Photosystem II Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Br2118
b:82.5
occ:0.45
|
BR1
|
a:K2I2118
|
0.0
|
82.5
|
0.5
|
|
C1
|
a:K2I2118
|
1.9
|
101.6
|
0.5
|
|
C
|
a:K2I2118
|
2.6
|
105.2
|
0.6
|
|
BR1
|
a:K2I2118
|
2.7
|
111.9
|
0.6
|
|
C
|
a:K2I2118
|
2.9
|
106.7
|
0.5
|
|
C2
|
a:K2I2118
|
2.9
|
103.2
|
0.5
|
|
O
|
a:K2I2118
|
3.0
|
101.6
|
0.5
|
|
C1
|
a:K2I2118
|
3.1
|
106.6
|
0.6
|
|
C5
|
a:K2I2118
|
3.8
|
104.7
|
0.6
|
|
CB
|
a:ALA251
|
3.9
|
53.7
|
1.0
|
|
CB
|
a:LEU218
|
3.9
|
46.8
|
1.0
|
|
CD2
|
a:LEU271
|
4.0
|
55.9
|
1.0
|
|
CG2
|
a:VAL219
|
4.1
|
45.5
|
1.0
|
|
CE2
|
a:TYR246
|
4.2
|
68.0
|
1.0
|
|
C5
|
a:K2I2118
|
4.2
|
106.8
|
0.5
|
|
O1
|
a:K2I2118
|
4.2
|
103.6
|
0.6
|
|
C3
|
a:K2I2118
|
4.2
|
105.6
|
0.5
|
|
CG1
|
a:ILE248
|
4.3
|
73.7
|
1.0
|
|
ND1
|
a:HIS215
|
4.3
|
45.8
|
1.0
|
|
CE1
|
a:HIS215
|
4.5
|
45.9
|
1.0
|
|
OH
|
a:TYR246
|
4.5
|
84.1
|
1.0
|
|
N
|
a:VAL219
|
4.5
|
45.7
|
1.0
|
|
CD1
|
a:LEU218
|
4.5
|
59.8
|
1.0
|
|
C2
|
a:K2I2118
|
4.5
|
107.0
|
0.6
|
|
C
|
a:LEU218
|
4.6
|
44.9
|
1.0
|
|
C4
|
a:K2I2118
|
4.7
|
107.4
|
0.5
|
|
CD1
|
a:ILE248
|
4.7
|
79.2
|
1.0
|
|
CZ
|
a:TYR246
|
4.7
|
73.2
|
1.0
|
|
CG
|
a:LEU218
|
4.9
|
58.3
|
1.0
|
|
CA
|
a:LEU218
|
4.9
|
44.1
|
1.0
|
|
CA
|
a:VAL219
|
4.9
|
48.0
|
1.0
|
|
Reference:
S.Kamada,
Y.Nakajima,
J.R.Shen.
Structural Insights Into the Action Mechanisms of Artificial Electron Acceptors in Photosystem II. J.Biol.Chem. V. 299 04839 2023.
ISSN: ESSN 1083-351X
PubMed: 37209822
DOI: 10.1016/J.JBC.2023.104839
Page generated: Thu Jul 11 05:13:00 2024
|
