Bromine in PDB 8je7: Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Protein crystallography data
The structure of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95), PDB code: 8je7
was solved by
R.Goswami,
Y.Manickam,
J.Chhibber-Goel,
K.Harlos,
A.Sharma,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
83.81 /
2.14
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.675,
113.712,
123.999,
90,
90,
90
|
R / Rfree (%)
|
18 /
22.8
|
Other elements in 8je7:
The structure of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) also contains other interesting chemical elements:
Bromine Binding Sites:
The binding sites of Bromine atom in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
(pdb code 8je7). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the
Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95), PDB code: 8je7:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
Bromine binding site 1 out
of 6 in 8je7
Go back to
Bromine Binding Sites List in 8je7
Bromine binding site 1 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br1801
b:145.8
occ:0.93
|
BR1
|
A:HFG1801
|
0.0
|
145.8
|
0.9
|
C7
|
A:HFG1801
|
1.9
|
83.9
|
0.9
|
C8
|
A:HFG1801
|
2.8
|
52.3
|
0.9
|
C6
|
A:HFG1801
|
2.9
|
59.6
|
0.9
|
O
|
A:HOH1964
|
3.3
|
60.3
|
1.0
|
CL1
|
A:HFG1801
|
3.3
|
52.3
|
0.9
|
CG1
|
A:VAL1308
|
3.5
|
72.7
|
1.0
|
N
|
A:GLU1307
|
3.7
|
75.1
|
1.0
|
O
|
A:HOH1911
|
3.7
|
53.8
|
0.4
|
CB
|
A:PRO1327
|
3.9
|
36.5
|
1.0
|
C
|
A:GLU1307
|
3.9
|
60.8
|
1.0
|
CB
|
A:PRO1306
|
3.9
|
88.2
|
1.0
|
N
|
A:VAL1308
|
4.0
|
52.8
|
1.0
|
O
|
A:GLU1307
|
4.1
|
65.5
|
1.0
|
C9
|
A:HFG1801
|
4.1
|
47.8
|
0.9
|
C
|
A:PRO1306
|
4.2
|
80.5
|
1.0
|
CG
|
A:PRO1327
|
4.2
|
40.3
|
1.0
|
C5
|
A:HFG1801
|
4.2
|
50.3
|
0.9
|
CA
|
A:GLU1307
|
4.3
|
69.8
|
1.0
|
CA
|
A:PRO1306
|
4.4
|
89.7
|
1.0
|
CA
|
A:VAL1308
|
4.4
|
58.7
|
1.0
|
CB
|
A:VAL1308
|
4.5
|
65.6
|
1.0
|
O
|
A:HOH1911
|
4.6
|
57.5
|
0.6
|
O
|
A:HOH2036
|
4.6
|
72.5
|
1.0
|
C10
|
A:HFG1801
|
4.7
|
50.1
|
0.9
|
CB
|
A:GLU1307
|
4.8
|
71.9
|
1.0
|
CG
|
A:ARG1359
|
4.8
|
43.4
|
1.0
|
O
|
A:PRO1306
|
4.9
|
69.7
|
1.0
|
|
Bromine binding site 2 out
of 6 in 8je7
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Bromine Binding Sites List in 8je7
Bromine binding site 2 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br1803
b:48.6
occ:0.44
|
O7'
|
A:HFG1801
|
3.1
|
43.3
|
0.9
|
NH1
|
A:ARG1359
|
3.2
|
47.5
|
1.0
|
NH2
|
A:ARG1359
|
3.2
|
41.7
|
1.0
|
C19
|
A:JE61802
|
3.3
|
48.8
|
0.9
|
O4'
|
A:HFG1801
|
3.5
|
46.2
|
0.9
|
C21
|
A:HFG1801
|
3.5
|
50.1
|
0.9
|
C2
|
A:HFG1801
|
3.6
|
43.3
|
0.9
|
C39
|
A:HFG1801
|
3.6
|
41.5
|
0.9
|
C1'
|
A:HFG1801
|
3.7
|
45.7
|
0.9
|
CZ
|
A:ARG1359
|
3.7
|
53.2
|
1.0
|
C18
|
A:JE61802
|
3.7
|
44.3
|
0.9
|
C15
|
A:JE61802
|
4.0
|
41.5
|
0.9
|
N3
|
A:HFG1801
|
4.1
|
41.7
|
0.9
|
C3'
|
A:HFG1801
|
4.3
|
41.5
|
0.9
|
C14
|
A:JE61802
|
4.4
|
43.9
|
0.9
|
CZ3
|
A:TRP1376
|
4.4
|
45.8
|
1.0
|
N1
|
A:HFG1801
|
4.5
|
47.4
|
0.9
|
C16
|
A:JE61802
|
4.5
|
43.8
|
0.9
|
C2'
|
A:HFG1801
|
4.5
|
39.0
|
0.9
|
C20
|
A:JE61802
|
4.6
|
38.2
|
0.9
|
C4'
|
A:HFG1801
|
4.8
|
42.9
|
0.9
|
CH2
|
A:TRP1376
|
4.9
|
45.8
|
1.0
|
|
Bromine binding site 3 out
of 6 in 8je7
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Bromine Binding Sites List in 8je7
Bromine binding site 3 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br1804
b:108.7
occ:0.76
|
CD1
|
A:PHE1423
|
3.9
|
56.2
|
1.0
|
C1'
|
A:HFG1801
|
3.9
|
45.7
|
0.9
|
C2
|
A:HFG1801
|
4.3
|
43.3
|
0.9
|
N3
|
A:HFG1801
|
4.3
|
41.7
|
0.9
|
CA
|
A:PHE1423
|
4.4
|
52.1
|
1.0
|
CB
|
A:PHE1423
|
4.7
|
56.8
|
1.0
|
CE1
|
A:PHE1423
|
4.7
|
55.7
|
1.0
|
CG
|
A:PHE1423
|
4.7
|
58.3
|
1.0
|
|
Bromine binding site 4 out
of 6 in 8je7
Go back to
Bromine Binding Sites List in 8je7
Bromine binding site 4 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br1801
b:128.6
occ:0.87
|
BR1
|
B:HFG1801
|
0.0
|
128.6
|
0.9
|
C7
|
B:HFG1801
|
1.9
|
63.8
|
0.9
|
C8
|
B:HFG1801
|
2.8
|
42.8
|
0.9
|
C6
|
B:HFG1801
|
2.9
|
39.4
|
0.9
|
O
|
B:HOH1959
|
3.0
|
70.2
|
1.0
|
CL1
|
B:HFG1801
|
3.3
|
44.7
|
0.9
|
O
|
B:HOH2055
|
3.3
|
47.0
|
0.8
|
CG1
|
B:VAL1308
|
3.6
|
50.8
|
1.0
|
C
|
B:GLU1307
|
3.7
|
58.4
|
1.0
|
O
|
B:GLU1307
|
3.7
|
63.3
|
1.0
|
N
|
B:GLU1307
|
3.7
|
58.5
|
1.0
|
CB
|
B:PRO1327
|
3.9
|
41.6
|
1.0
|
O
|
B:HOH2098
|
3.9
|
65.9
|
1.0
|
N
|
B:VAL1308
|
4.0
|
46.2
|
1.0
|
CG
|
B:PRO1327
|
4.1
|
36.6
|
1.0
|
CA
|
B:GLU1307
|
4.1
|
58.8
|
1.0
|
C9
|
B:HFG1801
|
4.1
|
37.3
|
0.9
|
C5
|
B:HFG1801
|
4.2
|
37.7
|
0.9
|
O
|
B:HOH1998
|
4.2
|
50.5
|
1.0
|
CB
|
B:PRO1306
|
4.3
|
72.8
|
1.0
|
C
|
B:PRO1306
|
4.4
|
66.7
|
1.0
|
CB
|
B:GLU1307
|
4.4
|
64.3
|
1.0
|
CA
|
B:VAL1308
|
4.5
|
51.6
|
1.0
|
CA
|
B:PRO1306
|
4.6
|
68.4
|
1.0
|
C10
|
B:HFG1801
|
4.7
|
37.6
|
0.9
|
CB
|
B:VAL1308
|
4.7
|
53.6
|
1.0
|
|
Bromine binding site 5 out
of 6 in 8je7
Go back to
Bromine Binding Sites List in 8je7
Bromine binding site 5 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br1803
b:59.9
occ:0.77
|
O7'
|
B:HFG1801
|
3.1
|
32.8
|
0.9
|
NH1
|
B:ARG1359
|
3.3
|
43.9
|
1.0
|
NH2
|
B:ARG1359
|
3.4
|
43.9
|
1.0
|
C19
|
B:JE61802
|
3.5
|
37.4
|
0.9
|
O4'
|
B:HFG1801
|
3.5
|
33.2
|
0.9
|
C21
|
B:HFG1801
|
3.6
|
42.9
|
0.9
|
C39
|
B:HFG1801
|
3.7
|
28.0
|
0.9
|
C18
|
B:JE61802
|
3.7
|
35.6
|
0.9
|
C2
|
B:HFG1801
|
3.8
|
32.2
|
0.9
|
CZ
|
B:ARG1359
|
3.8
|
46.6
|
1.0
|
C1'
|
B:HFG1801
|
3.8
|
39.8
|
0.9
|
C15
|
B:JE61802
|
3.8
|
29.0
|
0.9
|
O
|
B:HOH2097
|
4.1
|
63.4
|
1.0
|
C14
|
B:JE61802
|
4.1
|
30.5
|
0.9
|
N3
|
B:HFG1801
|
4.2
|
35.9
|
0.9
|
CZ3
|
B:TRP1376
|
4.4
|
34.1
|
1.0
|
C16
|
B:JE61802
|
4.4
|
36.5
|
0.9
|
C3'
|
B:HFG1801
|
4.4
|
38.4
|
0.9
|
C2'
|
B:HFG1801
|
4.6
|
37.2
|
0.9
|
N1
|
B:HFG1801
|
4.6
|
34.7
|
0.9
|
C20
|
B:JE61802
|
4.7
|
33.4
|
0.9
|
C4'
|
B:HFG1801
|
4.8
|
27.5
|
0.9
|
CH2
|
B:TRP1376
|
4.8
|
39.5
|
1.0
|
|
Bromine binding site 6 out
of 6 in 8je7
Go back to
Bromine Binding Sites List in 8je7
Bromine binding site 6 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Br1804
b:102.2
occ:0.73
|
O
|
B:HOH2011
|
3.5
|
58.7
|
1.0
|
C1'
|
B:HFG1801
|
3.8
|
39.8
|
0.9
|
O
|
B:HOH2073
|
3.9
|
60.2
|
0.9
|
CD1
|
B:PHE1423
|
4.0
|
36.5
|
1.0
|
O
|
B:HOH2034
|
4.0
|
53.1
|
1.0
|
N3
|
B:HFG1801
|
4.3
|
35.9
|
0.9
|
C2
|
B:HFG1801
|
4.3
|
32.2
|
0.9
|
CA
|
B:PHE1423
|
4.3
|
38.2
|
1.0
|
O
|
B:HOH2097
|
4.4
|
63.4
|
1.0
|
CB
|
B:PHE1423
|
4.6
|
44.7
|
1.0
|
CG
|
B:PHE1423
|
4.6
|
42.0
|
1.0
|
CE1
|
B:PHE1423
|
4.7
|
40.6
|
1.0
|
N
|
B:PHE1423
|
5.0
|
40.7
|
1.0
|
|
Reference:
R.Goswami,
J.Chhibber-Goel,
Y.Manickam,
S.Gupta,
K.Harlos,
B.Laleu,
A.Sharma.
Targeting Prolyl-Trna Synthetase of Anopheles Culicifacies For the Development of New Larvicide To Be Published.
Page generated: Tue Dec 10 18:20:24 2024
|