Bromine in PDB 8k2l: Crystal Structure of Group 4 Monosaccharide-Releasing Beta-N- Acetylgalactosaminidase NGAP2 From Paenibacillus Sp. TS12, Apo Form

The structure of Crystal Structure of Group 4 Monosaccharide-Releasing Beta-N- Acetylgalactosaminidase NGAP2 From Paenibacillus Sp. TS12, Apo Form, PDB code: 8k2l was solved by T.Sumida, S.Fushinobu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.70 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	119.116, 60.375, 100.285, 90, 120.08, 90
R / Rfree (%)	14.8 / 19.5

The binding sites of Bromine atom in the Crystal Structure of Group 4 Monosaccharide-Releasing Beta-N- Acetylgalactosaminidase NGAP2 From Paenibacillus Sp. TS12, Apo Form (pdb code 8k2l). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Group 4 Monosaccharide-Releasing Beta-N- Acetylgalactosaminidase NGAP2 From Paenibacillus Sp. TS12, Apo Form, PDB code: 8k2l:

Bromine binding site 1 out of 1 in the Crystal Structure of Group 4 Monosaccharide-Releasing Beta-N- Acetylgalactosaminidase NGAP2 From Paenibacillus Sp. TS12, Apo Form


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Group 4 Monosaccharide-Releasing Beta-N- Acetylgalactosaminidase NGAP2 From Paenibacillus Sp. TS12, Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Br601 b:22.6 occ:1.00 NZ A:LYS524 3.2 23.0 1.0 O A:HOH905 3.2 16.3 1.0 N A:THR190 3.3 15.7 1.0 N A:LEU191 3.5 15.3 1.0 CE A:LYS524 3.7 20.2 1.0 CG A:ARG521 3.8 17.8 1.0 OG1 A:THR190 3.8 19.3 1.0 CD A:LYS524 3.8 21.9 1.0 CA A:GLN189 3.9 16.4 1.0 CG A:GLN189 3.9 17.4 1.0 CG A:LEU520 3.9 14.4 1.0 CB A:LEU191 4.0 17.2 1.0 CD2 A:LEU520 4.0 18.1 1.0 C A:GLN189 4.1 15.0 1.0 CA A:THR190 4.2 17.7 1.0 C A:THR190 4.3 16.4 1.0 CA A:LEU191 4.4 15.1 1.0 CB A:GLN189 4.5 17.4 1.0 CA A:ARG521 4.5 13.0 1.0 N A:ARG521 4.6 13.7 1.0 CB A:THR190 4.6 19.7 1.0 CB A:ARG521 4.8 14.6 1.0 CD A:ARG521 4.8 19.0 1.0 CB A:LEU520 4.8 14.3 1.0 O A:HOH1019 4.8 40.7 1.0 C A:LEU520 4.9 13.4 1.0 O A:HOH901 4.9 22.2 1.0 O A:GLU188 4.9 15.5 1.0 CG A:LYS524 4.9 20.4 1.0 CD1 A:LEU520 4.9 15.3 1.0

T.Sumida, S.Hiraoka, K.Usui, A.Ishiwata, T.Sengoku, K.A.Stubbs, K.Tanaka, S.Deguchi, S.Fushinobu, T.Nunoura. Genetic and Functional Diversity of Beta-N-Acetylgalactosamine Residue-Targeting Glycosidases Expanded By Deep-Sea Metagenome To Be Published.