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Bromine in PDB 8olv: Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850

Protein crystallography data

The structure of Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850, PDB code: 8olv was solved by I.Silvestri, M.Marcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.42 / 2.81
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 90.012, 94.722, 225.042, 90, 90, 90
R / Rfree (%) 19.6 / 23.7

Other elements in 8olv:

The structure of Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850 also contains other interesting chemical elements:

Magnesium (Mg) 21 atoms
Potassium (K) 18 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850 (pdb code 8olv). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850, PDB code: 8olv:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 8olv

Go back to Bromine Binding Sites List in 8olv
Bromine binding site 1 out of 2 in the Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br443

b:152.2
occ:1.00
BR04 A:VTR443 0.0 152.2 1.0
C03 A:VTR443 1.9 139.6 1.0
C05 A:VTR443 2.9 154.2 1.0
C02 A:VTR443 2.9 110.5 1.0
C06 A:VTR443 3.1 163.0 1.0
O01 A:VTR443 3.2 111.3 1.0
O26 A:VTR443 3.5 145.6 1.0
OP2 A:G1 3.6 390.9 1.0
O3' A:G0 3.8 277.2 1.0
C07 A:VTR443 3.9 182.6 1.0
O2' A:G0 3.9 237.7 1.0
P A:G1 4.1 368.1 1.0
C27 A:VTR443 4.1 137.9 1.0
C31 A:VTR443 4.1 102.3 1.0
OP1 A:G1 4.3 340.4 1.0
O25 A:VTR443 4.6 186.7 1.0
C08 A:VTR443 4.6 216.6 1.0
C29 A:VTR443 4.6 110.3 1.0
N1 A:A181 5.0 225.8 1.0
C2' A:G0 5.0 275.2 1.0
C3' A:G0 5.0 278.2 1.0

Bromine binding site 2 out of 2 in 8olv

Go back to Bromine Binding Sites List in 8olv
Bromine binding site 2 out of 2 in the Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of Oceanobacillus Iheyensis Group II Intron in the Presence of K+, MG2+ and ARN25850 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br443

b:182.8
occ:1.00
BR28 A:VTR443 0.0 182.8 1.0
C27 A:VTR443 1.9 137.9 1.0
C29 A:VTR443 2.8 110.3 1.0
O30 A:VTR443 2.9 108.0 1.0
C05 A:VTR443 2.9 154.2 1.0
C06 A:VTR443 3.4 163.0 1.0
C08 A:VTR443 3.7 216.6 1.0
C07 A:VTR443 3.9 182.6 1.0
O26 A:VTR443 4.0 145.6 1.0
C31 A:VTR443 4.2 102.3 1.0
C03 A:VTR443 4.2 139.6 1.0
C02 A:VTR443 4.7 110.5 1.0
C09 A:VTR443 4.9 247.3 1.0
MG A:MG403 5.0 108.6 1.0

Reference:

I.Silvestri, J.Manigrasso, A.Andreani, N.Brindani, C.Mas, J.B.Reiser, P.Vidossich, G.Martino, A.Mccarthy, M.De Vivo, M.Marcia. Targeting the Conserved Active Site of Splicing Machines with Specific and Selective Small Molecule Modulators Nat Commun 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-48697-0
Page generated: Thu Jul 11 05:25:53 2024

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