Bromine in PDB 8ovy: Structure of Analogue of Superfolded Gfp

The structure of Structure of Analogue of Superfolded Gfp, PDB code: 8ovy was solved by D.Dunkelmann, M.Fiedler, D.Bellini, C.P.Alvira, J.W.Chin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	88.07 / 1.54
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	130.516, 37.721, 91.795, 90, 106.38, 90
R / Rfree (%)	18.6 / 21.5

The binding sites of Bromine atom in the Structure of Analogue of Superfolded Gfp (pdb code 8ovy). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Structure of Analogue of Superfolded Gfp, PDB code: 8ovy:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Structure of Analogue of Superfolded Gfp


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of Analogue of Superfolded Gfp within 5.0Å range: probe atom residue distance (Å) B Occ A:Br215 b:22.2 occ:0.40 BR1 A:W4T215 0.0 22.2 0.4 CE1 A:W4T215 1.9 21.1 1.0 CD1 A:W4T215 2.8 19.3 1.0 CZ A:W4T215 2.8 17.4 1.0 O B:SER175 3.2 17.8 1.0 O B:GLY174 3.4 23.6 1.0 CG B:ASN170 3.5 14.9 1.0 OD1 B:ASN170 3.5 15.2 1.0 CG2 B:VAL176 3.7 22.1 1.0 CB B:ASN170 3.8 14.1 1.0 C B:GLY174 3.8 20.5 1.0 ND2 B:ASN170 3.9 13.6 1.0 C B:SER175 4.0 19.7 1.0 CA B:ASN170 4.0 14.5 1.0 CG A:W4T215 4.1 19.1 1.0 CE2 A:W4T215 4.1 18.4 1.0 O A:HOH437 4.3 26.3 1.0 CA B:GLY174 4.4 21.4 1.0 N B:VAL171 4.4 15.3 1.0 N B:SER175 4.4 19.7 1.0 CD2 A:W4T215 4.6 17.3 1.0 O B:VAL171 4.6 16.2 1.0 CA B:SER175 4.7 21.1 1.0 C B:ASN170 4.7 13.9 1.0 N B:VAL176 4.7 18.5 1.0 O A:HOH485 4.8 28.3 1.0 CA B:VAL176 4.9 17.7 1.0 CB B:VAL176 4.9 19.3 1.0

Bromine binding site 2 out of 2 in the Structure of Analogue of Superfolded Gfp


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of Analogue of Superfolded Gfp within 5.0Å range: probe atom residue distance (Å) B Occ B:Br149 b:22.6 occ:0.40 BR1 B:W4T149 0.0 22.6 0.4 CE1 B:W4T149 1.9 18.6 1.0 CD1 B:W4T149 2.8 18.4 1.0 CZ B:W4T149 2.8 18.3 1.0 O A:SER241 3.3 19.1 1.0 O A:GLY240 3.4 22.2 1.0 CG A:ASN236 3.5 14.2 1.0 OD1 A:ASN236 3.6 15.8 1.0 CG2 A:VAL242 3.6 22.9 1.0 CB A:ASN236 3.7 13.9 1.0 C A:GLY240 3.9 22.7 1.0 ND2 A:ASN236 3.9 14.2 1.0 CA A:ASN236 4.0 14.0 1.0 C A:SER241 4.0 18.6 1.0 CG B:W4T149 4.1 16.6 1.0 CE2 B:W4T149 4.1 17.4 1.0 O B:HOH339 4.2 26.0 1.0 CA A:GLY240 4.4 21.1 1.0 N A:VAL237 4.4 14.8 1.0 N A:SER241 4.5 21.4 1.0 CD2 B:W4T149 4.6 18.8 1.0 N A:VAL242 4.7 20.1 1.0 CA A:SER241 4.7 21.8 1.0 O A:VAL237 4.7 17.6 1.0 C A:ASN236 4.7 13.5 1.0 CB A:VAL242 4.9 20.6 1.0 CA A:VAL242 4.9 18.2 1.0

D.Dunkelmann, M.Fiedler, D.Bellini, C.P.Alvira, J.W.Chin. Adding Alpha,Alpha-Disubstituted and Beta-Linked Monomers to the Genetic Code of An Organism Nature 2024.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06897-6